General information for g12263.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-binding cassette sub-family A member 12.
Parent gene
- The parent gene g12263 is located on chr_1: 22072808..22074004 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12263 | g12263.t1 | TTS | g12263.t1 | 22066696 | 22066696 |
| chr_1 | g12263 | g12263.t1 | isoform | g12263.t1 | 22066845 | 22074004 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon1 | 22066845 | 22067120 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS1 | 22066845 | 22067120 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon2 | 22067178 | 22067428 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS2 | 22067178 | 22067428 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon3 | 22067487 | 22068748 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS3 | 22067487 | 22068748 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon4 | 22068812 | 22069624 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS4 | 22068812 | 22069624 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon5 | 22069696 | 22070599 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS5 | 22069696 | 22070599 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon6 | 22070787 | 22071121 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS6 | 22070787 | 22071121 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon7 | 22071191 | 22071381 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS7 | 22071191 | 22071381 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon8 | 22071439 | 22072811 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS8 | 22071439 | 22072811 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon9 | 22072960 | 22073184 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS9 | 22072960 | 22073184 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon10 | 22073276 | 22073418 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS10 | 22073276 | 22073418 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon11 | 22073522 | 22073576 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS11 | 22073522 | 22073576 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon12 | 22073635 | 22073803 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS12 | 22073635 | 22073803 |
| chr_1 | g12263 | g12263.t1 | exon | g12263.t1.exon13 | 22073933 | 22074004 |
| chr_1 | g12263 | g12263.t1 | cds | g12263.t1.CDS13 | 22073933 | 22074004 |
| chr_1 | g12263 | g12263.t1 | TSS | g12263.t1 | 22074072 | 22074072 |
Sequences
>g12263.t1 Gene=g12263 Length=6069
ATGAAGCATTTAAATTATCGTCAAATACGTGCCTTAATCAAGAAAGACATTTTAGTTAGA
TTGAGACAACCATGGATGACATTTCTTTCATTTTTCTGGCCTTGTATGGTTTTTATGTCA
CTCTACATTTTAAGACTAAGGTTTAAGCCACATCAAATAGGTGATTGTCAATTTCCCACA
AGACAATTACCAACAAATGACTTGCTTCCATTTTTTCAGTCTTATATTTGCACAATTGAA
AATCAATGCTCAAGCGTTCATGAATATGAAGAAGTTGTTGATTGGCAAAAGGCTCCAGCG
ACTCCAGTACTTAACATAGTCCAAACATTTCTTAACGAAAAAGACTTGTATAAAGCAATC
GTGGACCTTCCGAAAACAATGGATTTTGTTTCTTTAGTAACCAAGCTAGCAACTCATCCA
AAGTTCAAGTACATTGAATCTAATGCCGATTATCTTGTTCGTAATTTGCCACAAATCAGA
AAAACAATTGGCAATTTTTTCGATGTTAACAAGCTCTTTTCAAATGATCGTATATTTTCA
AATTTGGGAAAAATTCTATGCAATAAGCCATTTCCAAGAAGCAATAATATTCGATATGTG
GACAATGTGCTTTATTCGCCTGATTATGCCGGACCAGACAAGGATGAATTGGAAGTCATG
CCGACACCTTATTGCAAACAACTATATCTTGATGTTACTAATTCAAACAATGGAAAGATT
ACTTGGAAGATTCTGAAGCCTATTATTCAAGGGAAGATCTTGTATGGACCTGTGACAGAT
GAAACAATGGAAATTATGTCATATGCAAACCATACAATGAATGACATGAGTCGACTTCGA
TCGTTCTTTAGATCTCTTGAAACTACAATTAAAATGTTAAAAACTAATAAAGAATTCCGA
GCTAAATTTGATGGACTTTTAAATCTTGCTAAAACGCCTTTCATACAAGCAATTTTGGGT
GGAAAAGTTGATATTCAGACCATAGAAATGGTAATTGATAGTGTTATAAATGAAGACCAA
GTTCTACTTGTTATTGAAACAATCGGTAACATTTTTGATTGCTATAATGTTGATAGATTT
ATACCAGTCAATAGTGAAAAAGAGTTAGAAGATGCTGCATTCAATTTAGCAAAGAAAAAA
CTTTTTTATGCTGCAGTTTTCTTTACAAATGATAAAAAGACAAATGAAACAACTTACAAA
TTAAGAATGGAAGTTGATAATACACCAGTGACTATTGAAAATCGTAATAGATTTTATTTT
CCTGGCCCAGAAGCAAGTTTTGAATTAGAAATGCGTTATCATCGTGGTTTCATTGAAATT
CAAAATTCTATTGATGTCGGAATTATTAAAGCAAAAAAGAAGAAACTAATAGAAGCAAAT
CGACCGAGAATTTCCTCCAAAACTACTACATCAGCACCGGATGACTTGGATTTTAGTGAC
AATGATTTTGACTTTGATGATGACAAAGAGGAAGAGAAGAACAAACAACAACAGCATGAC
ACAACAACAGAAGACCCAGATTTTGAAGGGCTTAGTTTTGATGATTTAGAGAACACAAGT
AGCGAAACAACAACAAAAGCAGTTACTTCCTCAACTACAGCAGCACCACCAATTAATATT
GCTGAGTTGTTAAGTGCATTTGTTAGTGGAGCATCAAGTGCAAGTCCCAAAAATAATTCA
GCTAACGATGATTTCGATTTTGACAATGAAAATTTTTGGAATTTTGATGATGGGGAATCT
ACAACAACAAAAGCAAGCACTACAAGAAAAAGGCGCCAACTTGAAGGTTTATTAAGCATG
TTTGGTGCAAAGTCTGATGCAAGCAAATTAAATCCAAATGAGGAAATAAAGTTTGATATT
GATGAAATGAGATTTTTTACAAAACAATTTCCATATCCAAAACATACGAGAGATGACTTT
AAAAAAGGCCTTTATTTAGCACAGGCCATTCAGATGACATTTTTCTTTGCTCTTATTATA
CTCATTTCATCTTCAGTGAGGCAGAAAATTTGGTTTAAAGAGAGTGGGAATTTATCTCTC
ATGCGAACAATGGGACTAAATGAGTCTTCAGAGACTGTTTCATGGATTGTTACTACATTT
TTCGAATTAGCCATTGTATTTTTCTTTATTTGTGTTATTTTGTACACTGGTGGAATTATG
CAATACTCAAGCAAGCTCTTAATTTACATTTATTTACTCTTTTTCGGCTTTTGTGTCATT
TCATTTTGTTTCATGGCATCATCATTCTTTTCTACTGCAAGCATTGGAAGTGTTTCAACT
GTAATTCTATTTTTAATGACATTCCTTCCTTATATTATTATCATCTCACTTGGTGCAGTA
TTAGGCTCCTTTGGAAAATTCATCGCGAGTCTCTCATTCTCAACTGCTTTTTGCTACGCA
TGGCATTACATCTTTCGCATTGAACTACAAGAAAGAAGTCTCACGCTTTTCAATGCATTC
AGTGGAGATGATGAAAATGACTTTAGATTTGGACTATTAATGATAATTTTAGATACATTC
CTTTATGCCGCAATTGGAATGTTTTATAAAAAGTATTCATCAGATGATCTCAAATTTGTC
AATGTTGAGCGAAGAAACATTGATAAAGATCACGGTGCAGAGATGAAGAAAGTTACAAAA
GTTTATGAAGGTTGTGATCCATCTAAGCCAGCTGTTGACAATGTTTCGTTGACCTTCAAG
AAAAATCAGATTGTTTGCATCCTCGGACGTAATGGTGCCGGCAAGTCAAGTGTTATAAAA
TTGCTAACTGGTCAAATAGCACCAACACTTGGTGAAATAATTTTACCATTAGATTATGAT
TTGATAACTGGTTTCAAAAACGATAATGAACAAGTTGGTTTGTGTCCGCAAAATAATGTT
CTTATTCCAAATTTAACAGCAAAAGAGCATTTAGAAATGTATGCACATATAAAATTAAGG
AAAGAACATCGAAGAGAAATTCGACGAGTAATGAATAACATGAAACTGGGGAAATATAAA
GATTATAAAGTTTCTGAATTATCAGGTGGTTATAAAAGACGTTTATGCATAGCAATTGCT
TTTCTTGGTTCACCTAATTTGGTCATTCTTGATGAACCTTGTTCTTCTGTCGATATAAGT
GCGAGAAAAGTAATTTGGGACTTGATTGAAACACTTCGCAAAAATCGTGCAGTAGTTATG
AGCACGCACGATCTTGAAGAAGCACAACATTTGGGAGATCAAATTATTATGATGAAAGAT
GGTCGAATAGCTTTAGAGGCAACAACAAAAGATTTACATAACGAGCTAACGAGAAATTTC
AATATTGTCATTGACTTAAAAGCTTCAATATCTAAAGATAAAGAGTCAATAGATGAAATT
AAAGAGATTGTTAATAGAAGTTGCAAAGGTGAAAACAACATCCATGTTAGAGACTGCTCA
ATGAATATAAATATGCCATATTTTGATGAAGAACACAAAAGAATTGACTATGGTGATTTA
TTTAGAGATTTAGAAAGACTTGTTACTGATAAAAAGATAATTGACTTCCATGTTTTGAGT
AAAACATTGGAGAGCTATTATAAAAATGTGGAGGAGGGTGGAAATATAAATGGTCATTCT
GTTACAAATGGCAACCATAATAATAATAATAATTTGGAGACAATTGACCTTAAACAGAGT
ATTAAATTAAATGGAAATTTCAATAATGGATCGAATGGCAGCAATAGCAGTTTCAAAGAT
GAAAACAAACTTTCATTACGCAAAATGATCTCAAATTTATTCCTCAAACGATTTTTACAT
TTTAAAAGAAATTATCGTTTGCTTATCTGCATCTTGATTCTTCCGGTCATTTTTGAAATT
ATCGCAATGGGTTTCCTAAAAATTCGTCCACCTGGTGATTATGATAATTCGATAGAATTT
AATCGTTCAATGTATCCGCAAAGTACTGAATTTTATTCTCAACAAAATATGCTTCCGTTT
GGCAAGCGAGTTTATAATGAGTTTCAAAGCACATGCTCGATCAATGAAAATTGTGAGTTT
TATAATTCATCAAAAGATGCATTTGATTGGGTTTTAAATACAAATGAAAAATATATTTTG
AAACGTTATGGTGGAATATCGATAAATCAATCAAGATCAATCGTATGGTATAATAACAAA
GGTTACCATTCGATGCCTCTTTATTTGAACATATTGAACTCAGCCATTCTTCGTAATGAA
CTAAATGATTCATCTTACAACATTCGTACAATCAATCATCCGTTAATGTTGGGTGAAAAT
GAATTAAGTGTTTCATCGATATTGCAACAAGTAGCAGACTCAGGAATTTCTCTTATTATA
CTCGTTGCATTTAGTTTAGTTATCGCAGGCGGTTCAGTTTATATTGTCAATGAGCGTGTA
ACTGGTGAAAAATTGCAGCAACAGTTATGTGGAGTGACTTACCCAATTTATTGGGGTGTT
GCTTTTATTTGGGATTTTGCAGTTTATGCCATTGCAATTTGTCTCGCTGTGATTGTATTT
CAAATTTTCAACATTCCAATTTATGTCGATATAAATAATTTGGCTGGAATCGTTTTGTTG
CTGTTCTTATTTGGTTTTGCAATGATTCCAGGTGTGCATCTTTTCGAAAAGGCCTTCAAA
GAAGCCAGTTTTGCAAATATGTCGATTTTCTGCTTGAATGTAATTATGGCATTATCGACA
GTTGCAAGCATTGTCATGTTTGATGTTTTACTAGAGACTGATGAGCAGCAAAAGATTCGA
AATGTTTTGAACCGCTTCTACCTCATATTTCCACAGCATGCACTAGCCGATGGATTAATA
GAAATATGTAAAAACTATATCACTGCAAAGATTTTTAGTCGCTATTATATTGACACATAT
AAAAATCCAATCACGAGTGATTTGTTGCGGCCACATTTCTTAGCATTAATTATACTTGGT
GTTGTATTTATTGTACTTAACTACATCATCGAAAGTGGAAAAATTTGGACTATTTTTAAA
ACTCAAACACCAAAGCAAAACAGTACAGAATTGAAAGTTATAACAATACAAAACACTCTA
ACAAAAGATGGAAAAATTAATGGAAATGGAAACAGCAGTGACGGAAATGAAGAATTGTTG
AAAGTTGAAAATGTATATCGAAGTTACGGAGGAAATGAATTTGCTGTCAATAATGTGTCC
TTCACAGTGAAAAAAGGTGAATGTTATGCGCTAATCGGATCTAATGGTGCAGGCAAGAGT
TCATTATTTTCGATACTATCAGGCGAAACAAAACGATTCATTGGAGCTGTCAAATATCGA
GGCGACAAAAATAGTGTTTCATATTGTCCACAATCGAATGCACTCGATTCATTATTGACT
GTTGAAGAAATTATCGAATTTTATGGAAAATTGCGTAATATCGACGACATTCGTTTCTTA
GTTGAAACAACTCTTGAGAATTTCCACTTGAAACCATACCGAAGAGTGTTGGTAAAAAAT
TTGAGTGGAGGCAATAAGAGGAAATTAAGTGTTGCATGTGCAAGTTTGGGCAATTTGTCA
CTAGTTCTAATGGATGAACCAGTTGCTGACATGGATCCATTAACAAGACATTTAGTTTAT
AAAACAATTCGAGAACTAAATGAAGAAAATTGTTCAGTGATTCTCACATCACATAGTATC
GCAGAAATTGAGGATGTTTGCCAGTCAGTAGGAATTTTAGTTGATGGCAGCATGGTTGCA
TCAGGAACACCTGAAAGGTTAAAGAAAGACTTTGGTAATCGCTATGTTGTGACGATTTTA
AGTGAAACACCACTTGATCATCAATTTGAAGCTGATTTAAGAAAAACTTTCCGTTCAATG
AAAAATTCAATATGTCATCAATATTCAGCACAATTTCTAATACAAGTTAGAGATTTTGAC
AAAATTGATCATTGTCATATAAAGCTAAGTGAGCTAATTGATTTACTTAATGCATTCACA
TCAGTCAAGGATCTCAAATACACAATAACAACATGCATGATTGACCAAGTGTATGAGAAT
ATAATTAAAAGAGGAGTACTTGGCGTGGATAATAATGGCTTTGTGCAAAATGAATACTAT
GCAACATAA
>g12263.t1 Gene=g12263 Length=2022
MKHLNYRQIRALIKKDILVRLRQPWMTFLSFFWPCMVFMSLYILRLRFKPHQIGDCQFPT
RQLPTNDLLPFFQSYICTIENQCSSVHEYEEVVDWQKAPATPVLNIVQTFLNEKDLYKAI
VDLPKTMDFVSLVTKLATHPKFKYIESNADYLVRNLPQIRKTIGNFFDVNKLFSNDRIFS
NLGKILCNKPFPRSNNIRYVDNVLYSPDYAGPDKDELEVMPTPYCKQLYLDVTNSNNGKI
TWKILKPIIQGKILYGPVTDETMEIMSYANHTMNDMSRLRSFFRSLETTIKMLKTNKEFR
AKFDGLLNLAKTPFIQAILGGKVDIQTIEMVIDSVINEDQVLLVIETIGNIFDCYNVDRF
IPVNSEKELEDAAFNLAKKKLFYAAVFFTNDKKTNETTYKLRMEVDNTPVTIENRNRFYF
PGPEASFELEMRYHRGFIEIQNSIDVGIIKAKKKKLIEANRPRISSKTTTSAPDDLDFSD
NDFDFDDDKEEEKNKQQQHDTTTEDPDFEGLSFDDLENTSSETTTKAVTSSTTAAPPINI
AELLSAFVSGASSASPKNNSANDDFDFDNENFWNFDDGESTTTKASTTRKRRQLEGLLSM
FGAKSDASKLNPNEEIKFDIDEMRFFTKQFPYPKHTRDDFKKGLYLAQAIQMTFFFALII
LISSSVRQKIWFKESGNLSLMRTMGLNESSETVSWIVTTFFELAIVFFFICVILYTGGIM
QYSSKLLIYIYLLFFGFCVISFCFMASSFFSTASIGSVSTVILFLMTFLPYIIIISLGAV
LGSFGKFIASLSFSTAFCYAWHYIFRIELQERSLTLFNAFSGDDENDFRFGLLMIILDTF
LYAAIGMFYKKYSSDDLKFVNVERRNIDKDHGAEMKKVTKVYEGCDPSKPAVDNVSLTFK
KNQIVCILGRNGAGKSSVIKLLTGQIAPTLGEIILPLDYDLITGFKNDNEQVGLCPQNNV
LIPNLTAKEHLEMYAHIKLRKEHRREIRRVMNNMKLGKYKDYKVSELSGGYKRRLCIAIA
FLGSPNLVILDEPCSSVDISARKVIWDLIETLRKNRAVVMSTHDLEEAQHLGDQIIMMKD
GRIALEATTKDLHNELTRNFNIVIDLKASISKDKESIDEIKEIVNRSCKGENNIHVRDCS
MNINMPYFDEEHKRIDYGDLFRDLERLVTDKKIIDFHVLSKTLESYYKNVEEGGNINGHS
VTNGNHNNNNNLETIDLKQSIKLNGNFNNGSNGSNSSFKDENKLSLRKMISNLFLKRFLH
FKRNYRLLICILILPVIFEIIAMGFLKIRPPGDYDNSIEFNRSMYPQSTEFYSQQNMLPF
GKRVYNEFQSTCSINENCEFYNSSKDAFDWVLNTNEKYILKRYGGISINQSRSIVWYNNK
GYHSMPLYLNILNSAILRNELNDSSYNIRTINHPLMLGENELSVSSILQQVADSGISLII
LVAFSLVIAGGSVYIVNERVTGEKLQQQLCGVTYPIYWGVAFIWDFAVYAIAICLAVIVF
QIFNIPIYVDINNLAGIVLLLFLFGFAMIPGVHLFEKAFKEASFANMSIFCLNVIMALST
VASIVMFDVLLETDEQQKIRNVLNRFYLIFPQHALADGLIEICKNYITAKIFSRYYIDTY
KNPITSDLLRPHFLALIILGVVFIVLNYIIESGKIWTIFKTQTPKQNSTELKVITIQNTL
TKDGKINGNGNSSDGNEELLKVENVYRSYGGNEFAVNNVSFTVKKGECYALIGSNGAGKS
SLFSILSGETKRFIGAVKYRGDKNSVSYCPQSNALDSLLTVEEIIEFYGKLRNIDDIRFL
VETTLENFHLKPYRRVLVKNLSGGNKRKLSVACASLGNLSLVLMDEPVADMDPLTRHLVY
KTIRELNEENCSVILTSHSIAEIEDVCQSVGILVDGSMVASGTPERLKKDFGNRYVVTIL
SETPLDHQFEADLRKTFRSMKNSICHQYSAQFLIQVRDFDKIDHCHIKLSELIDLLNAFT
SVKDLKYTITTCMIDQVYENIIKRGVLGVDNNGFVQNEYYAT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 38 | g12263.t1 | CDD | cd03263 | ABC_subfamily_A | 874 | 1083 | 1.37695E-70 |
| 39 | g12263.t1 | CDD | cd03263 | ABC_subfamily_A | 1700 | 1908 | 1.49906E-69 |
| 10 | g12263.t1 | Gene3D | G3DSA:3.40.50.300 | - | 873 | 1154 | 1.4E-57 |
| 9 | g12263.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1689 | 1924 | 3.7E-52 |
| 57 | g12263.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 532 | - |
| 58 | g12263.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 506 | - |
| 56 | g12263.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 514 | 532 | - |
| 5 | g12263.t1 | PANTHER | PTHR19229:SF229 | ABC TRANSPORTER FAMILY | 4 | 1921 | 2.1E-214 |
| 6 | g12263.t1 | PANTHER | PTHR19229 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA | 4 | 1921 | 2.1E-214 |
| 1 | g12263.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 548 | 797 | 5.0E-9 |
| 3 | g12263.t1 | Pfam | PF00005 | ABC transporter | 892 | 1034 | 7.6E-29 |
| 2 | g12263.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 1266 | 1648 | 2.3E-42 |
| 4 | g12263.t1 | Pfam | PF00005 | ABC transporter | 1716 | 1849 | 2.0E-21 |
| 22 | g12263.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 24 | - |
| 33 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 25 | 44 | - |
| 13 | g12263.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 45 | 643 | - |
| 29 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 644 | 666 | - |
| 20 | g12263.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 667 | 692 | - |
| 32 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 693 | 715 | - |
| 16 | g12263.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 716 | 726 | - |
| 31 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 727 | 750 | - |
| 21 | g12263.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 751 | 755 | - |
| 35 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 756 | 780 | - |
| 12 | g12263.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 781 | 786 | - |
| 34 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 787 | 805 | - |
| 24 | g12263.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 806 | 829 | - |
| 25 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 830 | 849 | - |
| 17 | g12263.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 850 | 1264 | - |
| 27 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1265 | 1286 | - |
| 23 | g12263.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1287 | 1434 | - |
| 26 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1435 | 1456 | - |
| 15 | g12263.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1457 | 1475 | - |
| 36 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1476 | 1502 | - |
| 18 | g12263.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1503 | 1513 | - |
| 37 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1514 | 1535 | - |
| 14 | g12263.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1536 | 1546 | - |
| 30 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1547 | 1567 | - |
| 19 | g12263.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1568 | 1631 | - |
| 28 | g12263.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1632 | 1650 | - |
| 11 | g12263.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1651 | 2022 | - |
| 55 | g12263.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 1821 | 1835 | - |
| 60 | g12263.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 873 | 1105 | 19.775 |
| 59 | g12263.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1700 | 1920 | 18.888 |
| 54 | g12263.t1 | SMART | SM00382 | AAA_5 | 901 | 1082 | 5.2E-8 |
| 53 | g12263.t1 | SMART | SM00382 | AAA_5 | 1725 | 1896 | 0.021 |
| 7 | g12263.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 874 | 1095 | 1.13E-51 |
| 8 | g12263.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1699 | 1912 | 6.1E-50 |
| 49 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
| 48 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 644 | 666 | - |
| 47 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 694 | 716 | - |
| 52 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 726 | 748 | - |
| 42 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 761 | 783 | - |
| 40 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 830 | 849 | - |
| 41 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1264 | 1286 | - |
| 50 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1434 | 1456 | - |
| 44 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1477 | 1499 | - |
| 45 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1514 | 1536 | - |
| 51 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1549 | 1571 | - |
| 46 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1586 | 1608 | - |
| 43 | g12263.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1628 | 1650 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05646 (ATP-binding cassette, subfamily A (ABC1), member 12)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
