Gene loci information

Transcript annotation

  • This transcript has been annotated as Nicotinate phosphoribosyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12267 g12267.t1 TSS g12267.t1 22086345 22086345
chr_1 g12267 g12267.t1 isoform g12267.t1 22086570 22090993
chr_1 g12267 g12267.t1 exon g12267.t1.exon1 22086570 22086675
chr_1 g12267 g12267.t1 cds g12267.t1.CDS1 22086570 22086675
chr_1 g12267 g12267.t1 exon g12267.t1.exon2 22086737 22086757
chr_1 g12267 g12267.t1 cds g12267.t1.CDS2 22086737 22086757
chr_1 g12267 g12267.t1 exon g12267.t1.exon3 22087093 22087602
chr_1 g12267 g12267.t1 cds g12267.t1.CDS3 22087093 22087602
chr_1 g12267 g12267.t1 exon g12267.t1.exon4 22088502 22088642
chr_1 g12267 g12267.t1 cds g12267.t1.CDS4 22088502 22088642
chr_1 g12267 g12267.t1 exon g12267.t1.exon5 22088729 22088900
chr_1 g12267 g12267.t1 cds g12267.t1.CDS5 22088729 22088900
chr_1 g12267 g12267.t1 exon g12267.t1.exon6 22090053 22090306
chr_1 g12267 g12267.t1 cds g12267.t1.CDS6 22090053 22090306
chr_1 g12267 g12267.t1 exon g12267.t1.exon7 22090367 22090640
chr_1 g12267 g12267.t1 cds g12267.t1.CDS7 22090367 22090640
chr_1 g12267 g12267.t1 exon g12267.t1.exon8 22090706 22090853
chr_1 g12267 g12267.t1 cds g12267.t1.CDS8 22090706 22090853
chr_1 g12267 g12267.t1 exon g12267.t1.exon9 22090916 22090993
chr_1 g12267 g12267.t1 cds g12267.t1.CDS9 22090916 22090993
chr_1 g12267 g12267.t1 TTS g12267.t1 22091578 22091578

Sequences

>g12267.t1 Gene=g12267 Length=1704
ATGACAACCACATGTGAGGATAATGAGATGAATAATTCAGGAATGGATGCATTTTCCATT
CAAAATTATCGCCGTGATTCAACTCATTGTTTTTATCAAAATAGAGTAATTCAACCATTG
TTAACAGATCTTTATCAGATAACGATGGCGTATGCTTATTGGAAATCAGGCAAAATAGAA
GATCAAGCTGTATTTGATTTGTTCTTCCGAAAAAATCCATTTCATGGCGAATTTACTATT
TTTTGTGGCCTAGAGGAATGTTTGAAATTTATTAAAAATTTCCATTATTCAGCGGGTGAT
ATCAATTATCTCAAGTCTGTTTTGCCTGAAGGGATTGAGGAGGAATTTTTCGAGTATTTG
GGAAAGTTGACTGCAAAAGACGTTACACTTTATGCTCTCGATGAAGGATCAGTTACATTT
CCTCGTATTCCATTGATGAGACTTGAAGGTCCTTTAATTATTGTACAACTACTCGAAACA
ACACTCTTGACACTTGTCAATTATGCAAGTCTTATGGCTACTAATGCTGCTCGATACAGA
ATTGTAGCTGGACCAGTAGCGAAACTATTAGAATTTGGTTTGCGACGTGCTCAAGGTCCC
GATGGAGGACTTTCTTCTTCAAAATATGCATACATTGGTGGTTTTGATGGGACATCAAAT
GTGTTAGCTGGAAAATTATTTAATATACCAGTAAAAGGAACACATGCTCATGCATACATA
ACTTCATATTCTGGTTTTGATGAGCTTGTTACTCGAGAACTTCCACATCGTGAAAGTGGT
GCTACAGCTGATTTGCTTGAGCTCTCTATTGAACATCGAAAAAATTTATCGAGTGTGCTG
CATATAAGTACACAAGAGGCAAACGATGGTGAATTGGCGGCCATGGTGTCATTTGCAATT
GCATTTCCCGATGGATTCATGGCTCTCGTCGACACGTACGATGTTAAACGGAGTGGACTT
TTGAATTTTTGTGCTGTTGCATTATCATTGAATGATCAAGGTTATCGTCCCGTTGGTATC
CGAATAGATTCTGGTGATTTGGCATATCTCTCATGTTTAGCGCGGCAAAATTTCATCACA
ATCAGTGAATATTACGGTTTGCCATGGTTTGCTGAATTAACTATTGTCGCATCAAATGAT
ATCAATGAAGAAACTATTTTAAGTTTAAATGAACAAGGTCACAAGATTGATTGTTTTGGA
ATTGGTACTCATTTGGTAACATGTCAAAAGCAGCCTGCATTGGGATGCGTTTACAAACTT
GTTGAGATCAATAATCAACCGCGAATAAAATTGAGTCAAGATGCTGAAAAAATAACTATG
CCTGGGAAAAAGAATGTTTTCCGATTGTATGGAACTGAAGGATGGGCTGTGATTGATATT
CTGCAAAAAGACGATGAAGATCCGCCTGAACCTGGAAAAAAAGTTTTATGTCGTCATCCT
TTCCATGAATCTAAACGAGCATTTGTAACACCTGCAAGAGTTGAAACTTTATATAAAATT
TGGTGGAAAGACGGTGCGATACGTCAACCAATACCAAGTTTGGAGGAAGTTAGAAATCGC
GTACAGGAATCTTTGGGAACTTTACGTCAAGATCATTTAAGACATTTGAATCCTACTCCG
TACAAAGTTGCTGTAAGTGATAATCTCTACAATTTTCTCCATGATTTGTGGTTATTAAAT
CAACCTATCGGGGAACTCTCGTGA

>g12267.t1 Gene=g12267 Length=567
MTTTCEDNEMNNSGMDAFSIQNYRRDSTHCFYQNRVIQPLLTDLYQITMAYAYWKSGKIE
DQAVFDLFFRKNPFHGEFTIFCGLEECLKFIKNFHYSAGDINYLKSVLPEGIEEEFFEYL
GKLTAKDVTLYALDEGSVTFPRIPLMRLEGPLIIVQLLETTLLTLVNYASLMATNAARYR
IVAGPVAKLLEFGLRRAQGPDGGLSSSKYAYIGGFDGTSNVLAGKLFNIPVKGTHAHAYI
TSYSGFDELVTRELPHRESGATADLLELSIEHRKNLSSVLHISTQEANDGELAAMVSFAI
AFPDGFMALVDTYDVKRSGLLNFCAVALSLNDQGYRPVGIRIDSGDLAYLSCLARQNFIT
ISEYYGLPWFAELTIVASNDINEETILSLNEQGHKIDCFGIGTHLVTCQKQPALGCVYKL
VEINNQPRIKLSQDAEKITMPGKKNVFRLYGTEGWAVIDILQKDDEDPPEPGKKVLCRHP
FHESKRAFVTPARVETLYKIWWKDGAIRQPIPSLEEVRNRVQESLGTLRQDHLRHLNPTP
YKVAVSDNLYNFLHDLWLLNQPIGELS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g12267.t1 CDD cd01570 NAPRTase_A 39 421 0
7 g12267.t1 Gene3D G3DSA:3.20.140.10 nicotinate phosphoribosyltransferase 29 189 0
9 g12267.t1 Gene3D G3DSA:3.20.20.70 Aldolase class I 190 256 0
8 g12267.t1 Gene3D G3DSA:3.20.140.10 nicotinate phosphoribosyltransferase 379 562 0
4 g12267.t1 PANTHER PTHR11098 NICOTINATE PHOSPHORIBOSYLTRANSFERASE 32 553 0
11 g12267.t1 PIRSF PIRSF000484 NAPRT 31 563 0
2 g12267.t1 Pfam PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain 40 167 0
3 g12267.t1 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 188 438 0
1 g12267.t1 Pfam PF17956 Nicotinate phosphoribosyltransferase C-terminal domain 443 552 0
6 g12267.t1 SUPERFAMILY SSF54675 Nicotinate/Quinolinate PRTase N-terminal domain-like 28 177 0
5 g12267.t1 SUPERFAMILY SSF51690 Nicotinate/Quinolinate PRTase C-terminal domain-like 173 562 0
10 g12267.t1 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 39 549 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004516 nicotinate phosphoribosyltransferase activity MF
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity MF
GO:0003824 catalytic activity MF
GO:0009435 NAD biosynthetic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values