Gene loci information

Transcript annotation

  • This transcript has been annotated as Nicotinate phosphoribosyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12267 g12267.t3 TSS g12267.t3 22086345 22086345
chr_1 g12267 g12267.t3 isoform g12267.t3 22086570 22091581
chr_1 g12267 g12267.t3 exon g12267.t3.exon1 22086570 22086675
chr_1 g12267 g12267.t3 exon g12267.t3.exon2 22087078 22087602
chr_1 g12267 g12267.t3 exon g12267.t3.exon3 22088502 22088646
chr_1 g12267 g12267.t3 exon g12267.t3.exon4 22088738 22088900
chr_1 g12267 g12267.t3 cds g12267.t3.CDS1 22088833 22088900
chr_1 g12267 g12267.t3 exon g12267.t3.exon5 22089085 22089201
chr_1 g12267 g12267.t3 cds g12267.t3.CDS2 22089085 22089201
chr_1 g12267 g12267.t3 exon g12267.t3.exon6 22090053 22090306
chr_1 g12267 g12267.t3 cds g12267.t3.CDS3 22090053 22090306
chr_1 g12267 g12267.t3 exon g12267.t3.exon7 22090367 22090640
chr_1 g12267 g12267.t3 cds g12267.t3.CDS4 22090367 22090640
chr_1 g12267 g12267.t3 exon g12267.t3.exon8 22090706 22090853
chr_1 g12267 g12267.t3 cds g12267.t3.CDS5 22090706 22090853
chr_1 g12267 g12267.t3 exon g12267.t3.exon9 22090916 22091581
chr_1 g12267 g12267.t3 cds g12267.t3.CDS6 22090916 22090993
chr_1 g12267 g12267.t3 TTS g12267.t3 22091578 22091578

Sequences

>g12267.t3 Gene=g12267 Length=2398
ATGACAACCACATGTGAGGATAATGAGATGAATAATTCAGGAATGGATGCATTTTCCATT
CAAAATTATCGCCGTGATTCAACTCATTGTTTTTATCAAAATAGAGTGAATATATTCACA
GATCTTTATCAGATAACGATGGCGTATGCTTATTGGAAATCAGGCAAAATAGAAGATCAA
GCTGTATTTGATTTGTTCTTCCGAAAAAATCCATTTCATGGCGAATTTACTATTTTTTGT
GGCCTAGAGGAATGTTTGAAATTTATTAAAAATTTCCATTATTCAGCGGGTGATATCAAT
TATCTCAAGTCTGTTTTGCCTGAAGGGATTGAGGAGGAATTTTTCGAGTATTTGGGAAAG
TTGACTGCAAAAGACGTTACACTTTATGCTCTCGATGAAGGATCAGTTACATTTCCTCGT
ATTCCATTGATGAGACTTGAAGGTCCTTTAATTATTGTACAACTACTCGAAACAACACTC
TTGACACTTGTCAATTATGCAAGTCTTATGGCTACTAATGCTGCTCGATACAGAATTGTA
GCTGGACCAGTAGCGAAACTATTAGAATTTGGTTTGCGACGTGCTCAAGGTCCCGATGGA
GGACTTTCTTCTTCAAAATATGCATACATTGGTGGTTTTGATGGGACATCAAATGTGTTA
GCTGGAAAATTATTTAATATACCAGTAAAAGGAACACATGCTCATGCATACATAACTTCA
TATTCTGGTTTTGATGAGCTTGTTACTCGAGAACTTCCACATCGTGAAAGTGGTGACTGA
TTTGCTTGAGCTCTCTATTGAACATCGAAAAAATTTATCGAGTGTGCTGCATATAAGTAC
ACAAGAGGCAAACGATGGTGAATTGGCGGCCATGGTGTCATTTGCAATTGCATTTCCCGA
TGGATTCATGGCTCTCGTCGACACGTACGATGTTAAACGATTCTCAAAAAAACAAAAATT
ATGTGAAAATGGAATGACACACGATATAAATCAAAATTATATCAATAATAACGATGATAT
TGATTTGATTTATCCAAAAGTTGGGAGCTCATTAAGGAGTGGACTTTTGAATTTTTGTGC
TGTTGCATTATCATTGAATGATCAAGGTTATCGTCCCGTTGGTATCCGAATAGATTCTGG
TGATTTGGCATATCTCTCATGTTTAGCGCGGCAAAATTTCATCACAATCAGTGAATATTA
CGGTTTGCCATGGTTTGCTGAATTAACTATTGTCGCATCAAATGATATCAATGAAGAAAC
TATTTTAAGTTTAAATGAACAAGGTCACAAGATTGATTGTTTTGGAATTGGTACTCATTT
GGTAACATGTCAAAAGCAGCCTGCATTGGGATGCGTTTACAAACTTGTTGAGATCAATAA
TCAACCGCGAATAAAATTGAGTCAAGATGCTGAAAAAATAACTATGCCTGGGAAAAAGAA
TGTTTTCCGATTGTATGGAACTGAAGGATGGGCTGTGATTGATATTCTGCAAAAAGACGA
TGAAGATCCGCCTGAACCTGGAAAAAAAGTTTTATGTCGTCATCCTTTCCATGAATCTAA
ACGAGCATTTGTAACACCTGCAAGAGTTGAAACTTTATATAAAATTTGGTGGAAAGACGG
TGCGATACGTCAACCAATACCAAGTTTGGAGGAAGTTAGAAATCGCGTACAGGAATCTTT
GGGAACTTTACGTCAAGATCATTTAAGACATTTGAATCCTACTCCGTACAAAGTTGCTGT
AAGTGATAATCTCTACAATTTTCTCCATGATTTGTGGTTATTAAATCAACCTATCGGGGA
ACTCTCGTGATAAAACTGAAGCCCCGCATCATTCATCTTCATTCTAACTTACCGCATTAT
GTTCAGCACATAATTTTAATTTTATGTACTAATTAGCCATCATTCACAATAAATAATTGG
AGTGATTGTGCAGTTTTTATTGAAATTTTTAAATTTCACTTCATTTTATTAGCCTGACTC
ACTTTTATCTCTTTCCTCCTCTGTCAGTCACACATCAGAAACATTCAAAATATAAACCAT
AAAAGACATGAGAAAATAGTTCAAAAAATTATCAAAAAAAACATGAGTATGCACTATTTT
GCAAATAGACATTTACTTAATAGTAAAATAAAATATAAAAAGGGAAAAAATAATTTGTAG
CACACTTTTGCACTTTTATTATAACTCATGTACCTATCTTTTGTCAATAATAAAAAAAAA
TTAAAATTGAAAAAAGCATCATGTTGGGACAGAATTAAAGTCAGGTGCCTTAAAAATAAT
TAGAGCTTTTTTATAATTTCCATTCATTTATCTACAATAGAAAGTTGAGTAGAAATATAA
AATAGTCATTAATTGTTAGAAATGAAAGTTATGTAATAAAATCAGCTTTAATGTTAAA

>g12267.t3 Gene=g12267 Length=312
MVSFAIAFPDGFMALVDTYDVKRFSKKQKLCENGMTHDINQNYINNNDDIDLIYPKVGSS
LRSGLLNFCAVALSLNDQGYRPVGIRIDSGDLAYLSCLARQNFITISEYYGLPWFAELTI
VASNDINEETILSLNEQGHKIDCFGIGTHLVTCQKQPALGCVYKLVEINNQPRIKLSQDA
EKITMPGKKNVFRLYGTEGWAVIDILQKDDEDPPEPGKKVLCRHPFHESKRAFVTPARVE
TLYKIWWKDGAIRQPIPSLEEVRNRVQESLGTLRQDHLRHLNPTPYKVAVSDNLYNFLHD
LWLLNQPIGELS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g12267.t3 Gene3D G3DSA:3.20.140.10 nicotinate phosphoribosyltransferase 122 307 0.0e+00
3 g12267.t3 PANTHER PTHR11098 NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1 298 0.0e+00
6 g12267.t3 PIRSF PIRSF000484 NAPRT 1 36 6.8e-02
7 g12267.t3 PIRSF PIRSF000484 NAPRT 56 308 0.0e+00
2 g12267.t3 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 82 184 3.1e-05
1 g12267.t3 Pfam PF17956 Nicotinate phosphoribosyltransferase C-terminal domain 188 297 0.0e+00
4 g12267.t3 SUPERFAMILY SSF51690 Nicotinate/Quinolinate PRTase C-terminal domain-like 61 307 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity MF
GO:0009435 NAD biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values