Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Nicotinate phosphoribosyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12267 g12267.t9 isoform g12267.t9 22090061 22091581
chr_1 g12267 g12267.t9 exon g12267.t9.exon1 22090061 22090306
chr_1 g12267 g12267.t9 exon g12267.t9.exon2 22090367 22090640
chr_1 g12267 g12267.t9 cds g12267.t9.CDS1 22090480 22090640
chr_1 g12267 g12267.t9 exon g12267.t9.exon3 22090706 22090846
chr_1 g12267 g12267.t9 cds g12267.t9.CDS2 22090706 22090846
chr_1 g12267 g12267.t9 exon g12267.t9.exon4 22090916 22091581
chr_1 g12267 g12267.t9 cds g12267.t9.CDS3 22090916 22090925
chr_1 g12267 g12267.t9 TTS g12267.t9 22091578 22091578
chr_1 g12267 g12267.t9 TSS g12267.t9 NA NA

Sequences

>g12267.t9 Gene=g12267 Length=1327
TTTTGAATTTTTGTGCTGTTGCATTATCATTGAATGATCAAGGTTATCGTCCCGTTGGTA
TCCGAATAGATTCTGGTGATTTGGCATATCTCTCATGTTTAGCGCGGCAAAATTTCATCA
CAATCAGTGAATATTACGGTTTGCCATGGTTTGCTGAATTAACTATTGTCGCATCAAATG
ATATCAATGAAGAAACTATTTTAAGTTTAAATGAACAAGGTCACAAGATTGATTGTTTTG
GAATTGGTACTCATTTGGTAACATGTCAAAAGCAGCCTGCATTGGGATGCGTTTACAAAC
TTGTTGAGATCAATAATCAACCGCGAATAAAATTGAGTCAAGATGCTGAAAAAATAACTA
TGCCTGGGAAAAAGAATGTTTTCCGATTGTATGGAACTGAAGGATGGGCTGTGATTGATA
TTCTGCAAAAAGACGATGAAGATCCGCCTGAACCTGGAAAAAAAGTTTTATGTCGTCATC
CTTTCCATGAATCTAAACGAGCATTTGTAACACCTGCAAGAGTTGAAACTTTATATAAAA
TTTGGTGGAAAGACGGTGCGATACGTCAACCAATACCAAGTTTGGAGGAAGTTAGAAATC
GCGTACAGGAATCTTTGGGAACTTTACGTCAAGATCATTTAAGACATTTGAATCCTACTC
CGTTGCTGTAAGTGATAATCTCTACAATTTTCTCCATGATTTGTGGTTATTAAATCAACC
TATCGGGGAACTCTCGTGATAAAACTGAAGCCCCGCATCATTCATCTTCATTCTAACTTA
CCGCATTATGTTCAGCACATAATTTTAATTTTATGTACTAATTAGCCATCATTCACAATA
AATAATTGGAGTGATTGTGCAGTTTTTATTGAAATTTTTAAATTTCACTTCATTTTATTA
GCCTGACTCACTTTTATCTCTTTCCTCCTCTGTCAGTCACACATCAGAAACATTCAAAAT
ATAAACCATAAAAGACATGAGAAAATAGTTCAAAAAATTATCAAAAAAAACATGAGTATG
CACTATTTTGCAAATAGACATTTACTTAATAGTAAAATAAAATATAAAAAGGGAAAAAAT
AATTTGTAGCACACTTTTGCACTTTTATTATAACTCATGTACCTATCTTTTGTCAATAAT
AAAAAAAAATTAAAATTGAAAAAAGCATCATGTTGGGACAGAATTAAAGTCAGGTGCCTT
AAAAATAATTAGAGCTTTTTTATAATTTCCATTCATTTATCTACAATAGAAAGTTGAGTA
GAAATATAAAATAGTCATTAATTGTTAGAAATGAAAGTTATGTAATAAAATCAGCTTTAA
TGTTAAA

>g12267.t9 Gene=g12267 Length=103
MPGKKNVFRLYGTEGWAVIDILQKDDEDPPEPGKKVLCRHPFHESKRAFVTPARVETLYK
IWWKDGAIRQPIPSLEEVRNRVQESLGTLRQDHLRHLNPTPLL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g12267.t9 Gene3D G3DSA:3.20.140.10 nicotinate phosphoribosyltransferase 1 102 0
2 g12267.t9 PANTHER PTHR11098:SF22 NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2-LIKE 1 101 0
3 g12267.t9 PANTHER PTHR11098 NICOTINATE PHOSPHORIBOSYLTRANSFERASE 1 101 0
1 g12267.t9 Pfam PF17956 Nicotinate phosphoribosyltransferase C-terminal domain 4 101 0
4 g12267.t9 SUPERFAMILY SSF51690 Nicotinate/Quinolinate PRTase C-terminal domain-like 1 102 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity MF
GO:0009435 NAD biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values