General information for g12294.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 567.
Parent gene
- The parent gene g12294 is located on chr_1: 22215546..22216935 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12294 | g12294.t1 | TTS | g12294.t1 | 22215414 | 22215414 |
| chr_1 | g12294 | g12294.t1 | isoform | g12294.t1 | 22215546 | 22216935 |
| chr_1 | g12294 | g12294.t1 | exon | g12294.t1.exon1 | 22215546 | 22215698 |
| chr_1 | g12294 | g12294.t1 | cds | g12294.t1.CDS1 | 22215546 | 22215698 |
| chr_1 | g12294 | g12294.t1 | exon | g12294.t1.exon2 | 22215757 | 22216935 |
| chr_1 | g12294 | g12294.t1 | cds | g12294.t1.CDS2 | 22215757 | 22216935 |
| chr_1 | g12294 | g12294.t1 | TSS | g12294.t1 | 22217033 | 22217033 |
Sequences
>g12294.t1 Gene=g12294 Length=1332
ATGAATGCAACTTTAAGTGAGTTACTGAATTGCTGCAGATGCTGCGCAAAATTTCTAATT
GGAGAGCAAAAACCGGTGAAAATTACAAAAAGTATCAAAACAAGATTTTTTCAACTAACA
TCAATTGAACTTTTGGAATCCGAGTATTATTCAAATAATATTTGTGAAAGCTGCAATTCA
AAATTAAGTGAATTTAGCGATTTTCGTAATGAATTAACTGAATATCAGAATAAATTGTAC
GAAATGTATATAGAAGAAGAAGCTGTTCAAGAAGAGGAGGAAGAAGTGATTTATTTAGAA
GAAGAAATTTACAAGCACGAGGAAGATGGAACAAATATTATTGATGATGACTATATTGTT
GAGGAAGTAGATTCAATTGAGCATTATAATGAAAACGAGAATGATTTGATGACTACATGC
AACACAGAATATCAAGTACTTTCCGAAACAGAATATCAAATTGAACCGAAACATAGAAGA
AAAAGTGAGAAGGTAAAAGTATGTGAGGTGTGCAATCAAACTTTAGCAGCTAGTGGTCTC
TATCATCACATGATGAGATTTCATTCAATTGATTCTAAATATGAATGCGATTATTGTCAA
AAAGCTTTCAGTTTAAAGAATGATCTCATAACACACATGAAAAGACATTTAAATCGTGAA
AGTCGAACAAAATATCCATGTTCAGATTGTGGTCGTGAGCTGCTTTCGCAATCATCTTTA
GTAAATCACAAGAAGCTCTTTCATTCAGATATTATTGAAATCCATCAATGTGAATATTGC
CCGAAAACTTTTCGATTACGTATGAAGTTATTACAGCATCAAAAGTTAGTGCATCAAAGT
ATTGGATCATTTTGTTGTCACATTTGCAACAAGACATTTGATGTTCGTGCCTATTTGGAG
AAGCATATAGAAAACGTTCATGGTGAAGCTAAGCCTTGTAATATTTGTGGAAAAATGTAC
AAACCTGCGTCACTGAAGCGACACATGTTTTCTCATGACGAAAAGAAATTCAAATGTCCT
TACGAAAATTGCGAAAAAATCTATCAAATGAAAATCTCTCTGAAAAATCACATTGTCACA
CATCACGAAGTTAATTCATCTGTCGATTGCGAGCATTGTGGCACAAATTTTCCATCTAAA
CGGCATCTAAACCGTCACGTTCAACGCCAGCATACTTCTGAAAAATTGCAATGTGAAGTT
GAAGGATGTTCGAATTTATTCTCTAGAAAGGATTATTTAGTTGAGCATTACAAGAAGCAT
AAGAATATTAATGATGAGTTGAGAAATGAATTGTTGGCAAGAGTTAAGAAAATTAAAATC
ATTTCATGGTAA
>g12294.t1 Gene=g12294 Length=443
MNATLSELLNCCRCCAKFLIGEQKPVKITKSIKTRFFQLTSIELLESEYYSNNICESCNS
KLSEFSDFRNELTEYQNKLYEMYIEEEAVQEEEEEVIYLEEEIYKHEEDGTNIIDDDYIV
EEVDSIEHYNENENDLMTTCNTEYQVLSETEYQIEPKHRRKSEKVKVCEVCNQTLAASGL
YHHMMRFHSIDSKYECDYCQKAFSLKNDLITHMKRHLNRESRTKYPCSDCGRELLSQSSL
VNHKKLFHSDIIEIHQCEYCPKTFRLRMKLLQHQKLVHQSIGSFCCHICNKTFDVRAYLE
KHIENVHGEAKPCNICGKMYKPASLKRHMFSHDEKKFKCPYENCEKIYQMKISLKNHIVT
HHEVNSSVDCEHCGTNFPSKRHLNRHVQRQHTSEKLQCEVEGCSNLFSRKDYLVEHYKKH
KNINDELRNELLARVKKIKIISW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 21 | g12294.t1 | Coils | Coil | Coil | 89 | 109 | - |
| 20 | g12294.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 136 | 220 | 1.6E-9 |
| 18 | g12294.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 221 | 280 | 4.3E-9 |
| 19 | g12294.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 283 | 310 | 4.7E-5 |
| 17 | g12294.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 311 | 368 | 3.2E-10 |
| 16 | g12294.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 369 | 420 | 5.2E-9 |
| 6 | g12294.t1 | PANTHER | PTHR24399 | ZINC FINGER AND BTB DOMAIN-CONTAINING | 47 | 362 | 9.0E-46 |
| 8 | g12294.t1 | PANTHER | PTHR24399:SF23 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED | 47 | 362 | 9.0E-46 |
| 7 | g12294.t1 | PANTHER | PTHR24399 | ZINC FINGER AND BTB DOMAIN-CONTAINING | 255 | 421 | 9.0E-46 |
| 9 | g12294.t1 | PANTHER | PTHR24399:SF23 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED | 255 | 421 | 9.0E-46 |
| 1 | g12294.t1 | Pfam | PF07776 | Zinc-finger associated domain (zf-AD) | 11 | 81 | 1.1E-6 |
| 5 | g12294.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 194 | 216 | 1.1E-4 |
| 3 | g12294.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 284 | 307 | 0.0034 |
| 4 | g12294.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 312 | 332 | 0.011 |
| 2 | g12294.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 370 | 391 | 0.0059 |
| 27 | g12294.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 196 | 216 | - |
| 23 | g12294.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 227 | 248 | - |
| 24 | g12294.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 257 | 278 | - |
| 26 | g12294.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 285 | 307 | - |
| 22 | g12294.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 370 | 391 | - |
| 25 | g12294.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 398 | 420 | - |
| 39 | g12294.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 194 | 221 | 12.3 |
| 42 | g12294.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 225 | 249 | 10.762 |
| 44 | g12294.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 255 | 278 | 10.429 |
| 41 | g12294.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 284 | 312 | 12.092 |
| 40 | g12294.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 337 | 361 | 8.787 |
| 43 | g12294.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 368 | 396 | 11.863 |
| 38 | g12294.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 396 | 425 | 9.203 |
| 28 | g12294.t1 | SMART | SM00868 | zf_AD_2 | 11 | 82 | 1.7E-4 |
| 36 | g12294.t1 | SMART | SM00355 | c2h2final6 | 166 | 188 | 63.0 |
| 37 | g12294.t1 | SMART | SM00355 | c2h2final6 | 194 | 216 | 2.9E-4 |
| 32 | g12294.t1 | SMART | SM00355 | c2h2final6 | 225 | 248 | 0.27 |
| 33 | g12294.t1 | SMART | SM00355 | c2h2final6 | 255 | 278 | 0.015 |
| 34 | g12294.t1 | SMART | SM00355 | c2h2final6 | 284 | 307 | 0.035 |
| 29 | g12294.t1 | SMART | SM00355 | c2h2final6 | 311 | 332 | 11.0 |
| 35 | g12294.t1 | SMART | SM00355 | c2h2final6 | 337 | 361 | 0.027 |
| 31 | g12294.t1 | SMART | SM00355 | c2h2final6 | 368 | 391 | 0.025 |
| 30 | g12294.t1 | SMART | SM00355 | c2h2final6 | 396 | 420 | 0.015 |
| 10 | g12294.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 10 | 82 | 1.1E-5 |
| 14 | g12294.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 163 | 218 | 4.78E-10 |
| 15 | g12294.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 223 | 265 | 5.45E-5 |
| 12 | g12294.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 254 | 303 | 4.48E-8 |
| 11 | g12294.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 322 | 377 | 2.11E-7 |
| 13 | g12294.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 370 | 420 | 5.41E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
