General information for g12296.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Neuroglian.
Parent gene
- The parent gene g12296 is located on chr_1: 22242124..22243213 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12296 | g12296.t1 | TSS | g12296.t1 | 22223480 | 22223480 |
| chr_1 | g12296 | g12296.t1 | isoform | g12296.t1 | 22223588 | 22242124 |
| chr_1 | g12296 | g12296.t1 | exon | g12296.t1.exon1 | 22223588 | 22223645 |
| chr_1 | g12296 | g12296.t1 | cds | g12296.t1.CDS1 | 22223588 | 22223645 |
| chr_1 | g12296 | g12296.t1 | exon | g12296.t1.exon2 | 22223703 | 22223829 |
| chr_1 | g12296 | g12296.t1 | cds | g12296.t1.CDS2 | 22223703 | 22223829 |
| chr_1 | g12296 | g12296.t1 | exon | g12296.t1.exon3 | 22235504 | 22237734 |
| chr_1 | g12296 | g12296.t1 | cds | g12296.t1.CDS3 | 22235504 | 22237734 |
| chr_1 | g12296 | g12296.t1 | exon | g12296.t1.exon4 | 22238387 | 22238960 |
| chr_1 | g12296 | g12296.t1 | cds | g12296.t1.CDS4 | 22238387 | 22238960 |
| chr_1 | g12296 | g12296.t1 | exon | g12296.t1.exon5 | 22239022 | 22239368 |
| chr_1 | g12296 | g12296.t1 | cds | g12296.t1.CDS5 | 22239022 | 22239368 |
| chr_1 | g12296 | g12296.t1 | exon | g12296.t1.exon6 | 22239432 | 22239648 |
| chr_1 | g12296 | g12296.t1 | cds | g12296.t1.CDS6 | 22239432 | 22239648 |
| chr_1 | g12296 | g12296.t1 | exon | g12296.t1.exon7 | 22241043 | 22241143 |
| chr_1 | g12296 | g12296.t1 | cds | g12296.t1.CDS7 | 22241043 | 22241143 |
| chr_1 | g12296 | g12296.t1 | exon | g12296.t1.exon8 | 22241586 | 22241677 |
| chr_1 | g12296 | g12296.t1 | cds | g12296.t1.CDS8 | 22241586 | 22241677 |
| chr_1 | g12296 | g12296.t1 | exon | g12296.t1.exon9 | 22241975 | 22241985 |
| chr_1 | g12296 | g12296.t1 | cds | g12296.t1.CDS9 | 22241975 | 22241985 |
| chr_1 | g12296 | g12296.t1 | exon | g12296.t1.exon10 | 22242109 | 22242124 |
| chr_1 | g12296 | g12296.t1 | cds | g12296.t1.CDS10 | 22242109 | 22242124 |
| chr_1 | g12296 | g12296.t1 | TTS | g12296.t1 | NA | NA |
Sequences
>g12296.t1 Gene=g12296 Length=3774
ATGTGGCGATCAAGTTTTATTTTGGTCGTTGCATTGACCGTAACATCATATGCAATAATT
CATTCACCGCCTCGGATAACAAAACAACCAATTGCTGAGGAAATGCTGTTTCAAGTTGCA
CAATTTGGTGATACAGAAAAACTGTTTATAATTGAATGTGAAGCAGAAGGAGAACCGGCG
CCAAAATATCGCTGGATCAAAAACGGAAAACATTTTGATTTCACTGCTTATGATGATCGA
ATTACTCAACAGCCAGGTCGTGGTACATTAACAATTACAAAACCACGTGACGAAGACTTG
GGTCAATATCAGTGCTTTGCTGAAAATGAGCATGGTATTGCAACGTCGAATTCAGTATTT
GTTAGAAAGTCCGAATTAAACAATTTCAAGGATGAGGATATTGTTACGCAAGAAGCCGAT
GAAGGAAAACCATTTAAATTACAATGTCAACCGCCAGATGGATGGCCAAAACCAAATGTA
TATTGGATGCTTCAAACAACAACCGGTGGTATTAAAACAATCAACAACTCACGTATGACC
CTTGATCCCGAGGGAAATTTATGGTTCTCAAACGTTACACGTTATGACGCACAAGAAGAT
GCCTATTATGCATGTGCAGCTTCATCAGCATTCCGTAACGAATACAAATTGGGAAATCGT
GTTTTGCTTAAAGTCAATCCAGCCAGTAATGCTGCACAAAATCGTTTTCCACCCACGAAA
CAGTACGTCTCAAGACGTAATGAAGTTGCTTTGCGTGGACAAAAGATTGAAATTTTCTGT
ATTTATGGTGGAACACCGTTACCGCAAACTGTATGGAGTAAAAATGGGAAGCCAATAGCT
TGGAGCGATCGTATAACTCAAGGAAATTATGGAAAATCGTTAGTAATTCGGCATACTAAT
TTAGATGATAAAGGTTCATACACATGCGATGTTTCAAATGGTGCTGGTCAGCAACAATCG
GCTACAATTAATCTCGATATTAAGGCTATTCCATACTTTACTGTTGAGCCTGAGCCAGTG
AATGCAGCTGAAGAAGAAACTATTGAATTCAAATGTGAAGCTTCAGGTATTCCTGAACCT
GCAATTAAATGGATTCACAATGGTAAACCAATTGAAGAAGCTGCACCAAATCCACGTCGA
ATTGTTTCAAAGAATAAAATCATTATTAGAAATCTCGAGAAAAAAGATACTGGCAATTAT
GGTTGTAACGCTACAAATGCTCTCGGCTATGTTTATAAAGACGTTTATGTTAATGTTTTG
GCATTACCACCAGAAATTGAAGAAGCACCAGGAAAAGAGGCAACTGTTGATCTTCGTGAT
ATTACACTCAACTGTAAAGTTTTTGGTGCACCTAAACCAAAAATAAAATGGATTCGTAAT
GGCCAAGAATTGACTGGCGGTCGCTATGAGATTCAAGAAAGTGGCAGTTTACTTATCAAA
CAAGTTTTGTTTGGAGATGCTGGTGAATATATTTGTCATGCTGAGAATAAATTTGGTAAG
AAAGAAGCTAACGGAACTCTGATTGTTTATGAACATACAAAGATTACTGAAACGCCAATT
GATTATGAAGTTGTAGCTAAACAATTGGCTACATTCCGCTGTAACGCTGTCTCTGATCCA
TCACTGCCTCTCACAATTGAATGGTTATTTAATGATGAACCAATTGATTTTGATGCTCAA
GCACGATTCACAAAATCAAGTGATCATTCGTTGACAATTTCAGACACAATTGAACTTGAT
TCTGGAACATATACATGTCTTGCAAGTACTGAACTCGATTCAGCGCAAGCATCTGCTACA
TTAACTGTGCAAGATGCACCAAATGCTCCAAAATTAACTGGTACTGAATGTTATGAAGAT
TATGCGAAAATTTCATGGGAACCACAGGGTGACAATCGTTCGCCAATTTTATATTTCATT
ATTCAATATAATACATCATTTACACCTGCAACATGGGCAGATGCATCTACTCAAGTTCCT
GCAACTGATTTCTCTTACACCGTTGATATGAGTCCATGGGGAAATTATACTTTCCGTGTT
ATTGCAGTTAATAAAGTTGGCCCTTCAGCACCATCAGAACATAGTGATTCATGCAGCACA
CCACCAAAAGTTCCAGCCAAAAATCCTGATAATGTTGAAGGCAAAGGCACTGAGCCAAAT
AATCTCGTTATCAAATGGTCACCAATGCCTGAAATTGATCATAATGCTCCACAATTTCAC
TACCGTGTCTCATGGAAACGCGATGTTGCTGGTGCAGAATGGCAGAAACGTGACATTCAC
GATTGGCAAAAAGGTGAGTTGCTTATACCAGATCAACCGACATTCCAACGTTATAAGATC
AGAGTCCAAGCTGTAAATGAAAAAGGTGAAGCAGCAGTCGCAGTGAAAGAAGTTGAAGGC
TATTCCGGAGAAGACAAACCAACTGAAGCACCACAAAATTTCTCATTGCATCAAATTGTC
AGTGGAACTTCTGCAATGGTTTCCTGGAATGAAGTCTCACCTGAATCAATTCGTGGTCAT
TTCCGAGGCTACAAAATTCAAACATGGGTTGAAGGCGATGAAGACAATGTTAAGGAAATT
CTGATGAAGAGTCAAACTTCGAAAGCACTTGTTGATAAATTTACTCCAGATTCAACAAAC
TATGCTCGCATCATGGCATTTAATGATCGCTTTAATGGGCCACCTAGCAATACTATTCAA
TTTGATACACCTGAAGGTGTACCAAGTACAGTTCAGTCACTGCAAGCTTATCCTATGGGA
TCATCTGCTTTTTGGCTCACATGGAAGAGGCCATTATTAACAAATGGAAAGTTGCGTGGT
TATCGTATCTATTATGAAATTGTGAAAGGAACAGAACTTGAAGCGAGACAAGAAAGAGAG
CCAAGAATTGAAAATCCAGATCAAAAATCTGCTAAACTTGCTGGCTTGAAACCTAACACG
AAATATCGTATTCACATTGTTGGCTTTACAAAAATGGGAGAAGGAGAAGATTATTACATT
GAAGCTACAACAGGAGCCGCTAGAACTGACGGTATTATAATTCCTAAACCAGATGTTCCT
TCATTTGATTATGAACAACTTCCATCTGAAAATGGATATTCTAAAGTTAAGGTCCATTGG
AGACCAAATATTTCTGGAGATAAGCCTGGTTCACAGTTCTATGTAAAATATCGCGAACAA
GGAGCATCAACTTGGTTGAAAGGAGACGATCGAATCAATGAAGATTTTGCTGAAGTTGGA
GGTTTAGAATCAGACAAGGTTTATGAATTCCGCGTTGTTTCTGTTGATGGTGATGAGCAA
ACAGAAAGTGCCTCGAAACTTATTGAGGGTTCATCAGATGGAGTAAGAATCAGACCTCCA
GGTGATAATGGAATTGCGACAGCTGGTTGGTTTATTGGAATGCTTCTCGCTCTTGCATTC
CTTATTCTACTTTTGGTAATCATCTGCATCATTAAGCGTAATCGTGGTGGCAAGTACGAT
GTTCATGATAGAGAACTCGCTAATGGACGACAAGATTACCCTGATGAAGGCGGTTTTCAT
GAATATTCTCAACCTCTGGATAACAAATCACAAGGTAGACAATCATTAAGTTCACAAAAG
CATGGTCCCGAGAGCGATACGGACTCGATGGCCGAGTACGGTGATGGAGATACTGAGACC
GGAATGAATGAAGACGGTTCATTTATTGGACAGTATGGTCGTAAAGGAAAACAACAATCA
TCAAATAATCAAGCATTCGCCACGCTTTTTATTTTAAGGCGGTCAATTCGCTGA
>g12296.t1 Gene=g12296 Length=1257
MWRSSFILVVALTVTSYAIIHSPPRITKQPIAEEMLFQVAQFGDTEKLFIIECEAEGEPA
PKYRWIKNGKHFDFTAYDDRITQQPGRGTLTITKPRDEDLGQYQCFAENEHGIATSNSVF
VRKSELNNFKDEDIVTQEADEGKPFKLQCQPPDGWPKPNVYWMLQTTTGGIKTINNSRMT
LDPEGNLWFSNVTRYDAQEDAYYACAASSAFRNEYKLGNRVLLKVNPASNAAQNRFPPTK
QYVSRRNEVALRGQKIEIFCIYGGTPLPQTVWSKNGKPIAWSDRITQGNYGKSLVIRHTN
LDDKGSYTCDVSNGAGQQQSATINLDIKAIPYFTVEPEPVNAAEEETIEFKCEASGIPEP
AIKWIHNGKPIEEAAPNPRRIVSKNKIIIRNLEKKDTGNYGCNATNALGYVYKDVYVNVL
ALPPEIEEAPGKEATVDLRDITLNCKVFGAPKPKIKWIRNGQELTGGRYEIQESGSLLIK
QVLFGDAGEYICHAENKFGKKEANGTLIVYEHTKITETPIDYEVVAKQLATFRCNAVSDP
SLPLTIEWLFNDEPIDFDAQARFTKSSDHSLTISDTIELDSGTYTCLASTELDSAQASAT
LTVQDAPNAPKLTGTECYEDYAKISWEPQGDNRSPILYFIIQYNTSFTPATWADASTQVP
ATDFSYTVDMSPWGNYTFRVIAVNKVGPSAPSEHSDSCSTPPKVPAKNPDNVEGKGTEPN
NLVIKWSPMPEIDHNAPQFHYRVSWKRDVAGAEWQKRDIHDWQKGELLIPDQPTFQRYKI
RVQAVNEKGEAAVAVKEVEGYSGEDKPTEAPQNFSLHQIVSGTSAMVSWNEVSPESIRGH
FRGYKIQTWVEGDEDNVKEILMKSQTSKALVDKFTPDSTNYARIMAFNDRFNGPPSNTIQ
FDTPEGVPSTVQSLQAYPMGSSAFWLTWKRPLLTNGKLRGYRIYYEIVKGTELEARQERE
PRIENPDQKSAKLAGLKPNTKYRIHIVGFTKMGEGEDYYIEATTGAARTDGIIIPKPDVP
SFDYEQLPSENGYSKVKVHWRPNISGDKPGSQFYVKYREQGASTWLKGDDRINEDFAEVG
GLESDKVYEFRVVSVDGDEQTESASKLIEGSSDGVRIRPPGDNGIATAGWFIGMLLALAF
LILLLVIICIIKRNRGGKYDVHDRELANGRQDYPDEGGFHEYSQPLDNKSQGRQSLSSQK
HGPESDTDSMAEYGDGDTETGMNEDGSFIGQYGRKGKQQSSNNQAFATLFILRRSIR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 42 | g12296.t1 | CDD | cd00096 | Ig | 256 | 320 | 6.72024E-11 |
| 47 | g12296.t1 | CDD | cd00063 | FN3 | 607 | 695 | 9.80226E-13 |
| 43 | g12296.t1 | CDD | cd00063 | FN3 | 708 | 790 | 8.57789E-8 |
| 44 | g12296.t1 | CDD | cd00063 | FN3 | 809 | 903 | 3.36325E-9 |
| 46 | g12296.t1 | CDD | cd00063 | FN3 | 908 | 996 | 1.93903E-12 |
| 45 | g12296.t1 | CDD | cd00063 | FN3 | 1029 | 1105 | 2.2998E-6 |
| 28 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 13 | 123 | 2.8E-20 |
| 32 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 132 | 220 | 4.9E-16 |
| 26 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 237 | 329 | 1.0E-17 |
| 33 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 331 | 421 | 3.1E-23 |
| 27 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 422 | 511 | 2.2E-19 |
| 29 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 512 | 605 | 1.1E-18 |
| 31 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 606 | 700 | 4.0E-20 |
| 24 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 701 | 803 | 1.6E-23 |
| 34 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 804 | 905 | 1.5E-16 |
| 30 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 906 | 1016 | 5.9E-17 |
| 25 | g12296.t1 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 1021 | 1108 | 1.8E-7 |
| 67 | g12296.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 717 | - |
| 66 | g12296.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1186 | 1243 | - |
| 68 | g12296.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1186 | 1204 | - |
| 12 | g12296.t1 | PANTHER | PTHR13817 | TITIN | 6 | 1240 | 0.0 |
| 13 | g12296.t1 | PANTHER | PTHR13817:SF122 | NEUROGLIAN | 6 | 1240 | 0.0 |
| 2 | g12296.t1 | Pfam | PF13927 | Immunoglobulin domain | 23 | 109 | 1.5E-11 |
| 3 | g12296.t1 | Pfam | PF07679 | Immunoglobulin I-set domain | 248 | 325 | 1.3E-11 |
| 6 | g12296.t1 | Pfam | PF07679 | Immunoglobulin I-set domain | 331 | 419 | 1.8E-16 |
| 5 | g12296.t1 | Pfam | PF07679 | Immunoglobulin I-set domain | 439 | 509 | 1.9E-15 |
| 4 | g12296.t1 | Pfam | PF07679 | Immunoglobulin I-set domain | 514 | 603 | 1.5E-11 |
| 11 | g12296.t1 | Pfam | PF00041 | Fibronectin type III domain | 611 | 692 | 1.8E-8 |
| 7 | g12296.t1 | Pfam | PF00041 | Fibronectin type III domain | 708 | 790 | 1.6E-6 |
| 10 | g12296.t1 | Pfam | PF00041 | Fibronectin type III domain | 810 | 896 | 1.3E-9 |
| 9 | g12296.t1 | Pfam | PF00041 | Fibronectin type III domain | 910 | 996 | 5.5E-10 |
| 8 | g12296.t1 | Pfam | PF00041 | Fibronectin type III domain | 1030 | 1098 | 5.6E-6 |
| 1 | g12296.t1 | Pfam | PF13882 | Bravo-like intracellular region | 1152 | 1235 | 3.1E-22 |
| 37 | g12296.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 38 | g12296.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 39 | g12296.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 14 | - |
| 41 | g12296.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 18 | - |
| 36 | g12296.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 1127 | - |
| 40 | g12296.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1128 | 1151 | - |
| 35 | g12296.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1152 | 1257 | - |
| 78 | g12296.t1 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 24 | 120 | 12.35 |
| 76 | g12296.t1 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 132 | 218 | 7.558 |
| 75 | g12296.t1 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 238 | 324 | 12.078 |
| 77 | g12296.t1 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 331 | 418 | 13.384 |
| 74 | g12296.t1 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 424 | 508 | 12.495 |
| 79 | g12296.t1 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 513 | 602 | 10.916 |
| 71 | g12296.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 606 | 703 | 18.343 |
| 73 | g12296.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 708 | 805 | 16.907 |
| 70 | g12296.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 810 | 906 | 16.836 |
| 72 | g12296.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 907 | 1009 | 16.087 |
| 69 | g12296.t1 | ProSiteProfiles | PS50853 | Fibronectin type-III domain profile. | 1020 | 1120 | 9.973 |
| 51 | g12296.t1 | SMART | SM00409 | IG_3c | 38 | 124 | 0.55 |
| 61 | g12296.t1 | SMART | SM00408 | igc2_5 | 44 | 112 | 3.0E-9 |
| 54 | g12296.t1 | SMART | SM00409 | IG_3c | 134 | 226 | 3.0E-5 |
| 64 | g12296.t1 | SMART | SM00408 | igc2_5 | 140 | 212 | 2.2 |
| 50 | g12296.t1 | SMART | SM00409 | IG_3c | 245 | 328 | 1.7E-6 |
| 62 | g12296.t1 | SMART | SM00408 | igc2_5 | 251 | 316 | 3.9E-6 |
| 52 | g12296.t1 | SMART | SM00409 | IG_3c | 337 | 420 | 2.0E-9 |
| 60 | g12296.t1 | SMART | SM00408 | igc2_5 | 343 | 409 | 8.5E-12 |
| 49 | g12296.t1 | SMART | SM00409 | IG_3c | 430 | 510 | 1.1E-7 |
| 63 | g12296.t1 | SMART | SM00408 | igc2_5 | 436 | 499 | 2.4E-14 |
| 53 | g12296.t1 | SMART | SM00409 | IG_3c | 519 | 604 | 2.2E-9 |
| 65 | g12296.t1 | SMART | SM00408 | igc2_5 | 525 | 593 | 0.056 |
| 55 | g12296.t1 | SMART | SM00060 | FN3_2 | 607 | 689 | 4.3E-6 |
| 58 | g12296.t1 | SMART | SM00060 | FN3_2 | 705 | 791 | 0.0034 |
| 57 | g12296.t1 | SMART | SM00060 | FN3_2 | 808 | 893 | 0.37 |
| 59 | g12296.t1 | SMART | SM00060 | FN3_2 | 908 | 995 | 4.6E-9 |
| 56 | g12296.t1 | SMART | SM00060 | FN3_2 | 1017 | 1103 | 0.0025 |
| 22 | g12296.t1 | SUPERFAMILY | SSF48726 | Immunoglobulin | 38 | 121 | 3.29E-15 |
| 18 | g12296.t1 | SUPERFAMILY | SSF48726 | Immunoglobulin | 136 | 215 | 2.29E-10 |
| 21 | g12296.t1 | SUPERFAMILY | SSF48726 | Immunoglobulin | 246 | 337 | 1.99E-19 |
| 20 | g12296.t1 | SUPERFAMILY | SSF48726 | Immunoglobulin | 331 | 424 | 6.61E-20 |
| 19 | g12296.t1 | SUPERFAMILY | SSF48726 | Immunoglobulin | 440 | 518 | 3.03E-18 |
| 17 | g12296.t1 | SUPERFAMILY | SSF48726 | Immunoglobulin | 515 | 610 | 1.83E-18 |
| 14 | g12296.t1 | SUPERFAMILY | SSF49265 | Fibronectin type III | 605 | 791 | 5.03E-24 |
| 16 | g12296.t1 | SUPERFAMILY | SSF49265 | Fibronectin type III | 810 | 996 | 3.4E-28 |
| 15 | g12296.t1 | SUPERFAMILY | SSF49265 | Fibronectin type III | 1017 | 1099 | 1.26E-7 |
| 23 | g12296.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 48 | g12296.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1126 | 1148 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K06756 (neuronal cell adhesion molecule)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
