General information for g12324.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12324 is located on chr_1: 22500067..22501239 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12324 | g12324.t1 | isoform | g12324.t1 | 22500067 | 22501239 |
| chr_1 | g12324 | g12324.t1 | exon | g12324.t1.exon1 | 22500067 | 22501239 |
| chr_1 | g12324 | g12324.t1 | cds | g12324.t1.CDS1 | 22500067 | 22501239 |
| chr_1 | g12324 | g12324.t1 | TSS | g12324.t1 | NA | NA |
| chr_1 | g12324 | g12324.t1 | TTS | g12324.t1 | NA | NA |
Sequences
>g12324.t1 Gene=g12324 Length=1173
ATGGTTCGATTCAACCGAAAAACTCTAAGTGAGCGTCGCGAAGAACGCCATACACCACCT
CTTCCACCTTCGGTTCCGTCACCTCTACATGCAGATCTCTCAAATTATCGGATTCCTCGC
CGTAACGAAGTTTCATCAGATCAAGAGAGTCATGACTATCAGCGAAAAGAACCACGTGAA
CAACACTCTTCAAGAAATCGTGAACGACCAAGCAATCGTCATCGTCGTCGTTATTCACCT
TCCCCTCGTCGTCGTCGTTGTAGAGACCATTCACTCGATCGCGTTCGTCATCGCAACCAA
CCCAAACGAGAATCGTCACGAGTTCACTTTCAACCAATTGCCATGGAAATTTCACCTATT
CGTGAACCTGCACGTTCTCAACAGAGACGAAATTCAGTTCATCGTCGTTCAGTGCAAGGA
CCTCAGCTTCAACCATCGTTGGCTGAGAGATTGGGACCAATCCCAGCAAGTAGTCCTTTA
GTTCGCGTAACCACACGACGCACGACTTCCGTCCTCAAATTTGAAAACGTTCCAACAAAC
GTGGATCTGCTCAGTTTTCTCACACTACTTGGTCGAGAAGTACGCAGTGTTATTGGTGCA
ACTCGATTATATAATTACGAACAAAAGACAGTTGGTGATTCAATTTTCGTTTATTTGGTC
GATCAGGAAGAGATCGATGCTGCGGTTGGTCGAGGATTTACATTCAATTTTACTTCTGGT
CAGCAACTCATTAAGCCTTTGCTACTTTCTGCTGCCATCACATCAATTTATGCTGCCGAC
GCTCAGGATCCATCCTTGAGTCTTATTCCTACCATCATGCTCCGCAATTTAGTGCCAGTC
ACTACACGTCAAGCTATCGCTGCAGCTATCGACGCAGTTGATCTAATTGCTCAACGCGTC
AATTATGTCACCCATGTTCGTCTACCAGCAAAGGGTCTTGACTTAGCAAAGACGTCTTCT
TTGGCATTTGTCGGCATAAATTCAAAGGATCAAGTCAACGAACTCAATGGACAAGAAGTT
CAGAGATGTGGTAAAAAGGTTCCATTGCATAAGAGCGAACAAGTCCCCGTCTTAGTTCCT
GTTGGTTTCATGCGCCAGAATCGTGATGCTGCATGGATTCATCGTGCTGCGCAAGGCAAT
ATGCTGATTGCACGCTCTAACCCATTTGAATAG
>g12324.t1 Gene=g12324 Length=390
MVRFNRKTLSERREERHTPPLPPSVPSPLHADLSNYRIPRRNEVSSDQESHDYQRKEPRE
QHSSRNRERPSNRHRRRYSPSPRRRRCRDHSLDRVRHRNQPKRESSRVHFQPIAMEISPI
REPARSQQRRNSVHRRSVQGPQLQPSLAERLGPIPASSPLVRVTTRRTTSVLKFENVPTN
VDLLSFLTLLGREVRSVIGATRLYNYEQKTVGDSIFVYLVDQEEIDAAVGRGFTFNFTSG
QQLIKPLLLSAAITSIYAADAQDPSLSLIPTIMLRNLVPVTTRQAIAAAIDAVDLIAQRV
NYVTHVRLPAKGLDLAKTSSLAFVGINSKDQVNELNGQEVQRCGKKVPLHKSEQVPVLVP
VGFMRQNRDAAWIHRAAQGNMLIARSNPFE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g12324.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 151 | - |
| 4 | g12324.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - |
| 5 | g12324.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 67 | - |
| 1 | g12324.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 84 | - |
| 3 | g12324.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 100 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
