Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12339 g12339.t1 TSS g12339.t1 22638900 22638900
chr_1 g12339 g12339.t1 isoform g12339.t1 22639743 22641216
chr_1 g12339 g12339.t1 exon g12339.t1.exon1 22639743 22639754
chr_1 g12339 g12339.t1 cds g12339.t1.CDS1 22639743 22639754
chr_1 g12339 g12339.t1 exon g12339.t1.exon2 22639848 22640105
chr_1 g12339 g12339.t1 cds g12339.t1.CDS2 22639848 22640105
chr_1 g12339 g12339.t1 exon g12339.t1.exon3 22640194 22640872
chr_1 g12339 g12339.t1 cds g12339.t1.CDS3 22640194 22640872
chr_1 g12339 g12339.t1 exon g12339.t1.exon4 22640939 22641216
chr_1 g12339 g12339.t1 cds g12339.t1.CDS4 22640939 22641216
chr_1 g12339 g12339.t1 TTS g12339.t1 22641592 22641592

Sequences

>g12339.t1 Gene=g12339 Length=1227
ATGTTTCCATTCGGATCAGGTGCTACTTCTACCTCAATAAAAATTTCACCATACTGTGAT
AAATTTGTTAATAGTAATGAAGGCTATCTTCCCATGAGAATTAAAGTTCCTTTTGGAGCT
GGCTATTTTAATGACAATAATTCCATTTCTATTTCTACAAAACAAAATCAATTTTATGAT
AATTACCAACAATCTCAATCTCTAAGGCTTTATCCAGACTTGAATGATTTTTCTCCACAT
TTTCATTCAACAAGTGTTTACGCTTGTCAGGGTACTCCTACTGTTCTACCAAAAGAAAAC
TTTGATGCTCATGCTGATTCTGCAGCTTTACGAAAAGCAATGAAGGGCTGGGGTTGCAAT
GACGAAGAGTTAATTGAAATTTTATGTCGTCGCAGCAATGATCAACGTCAACAGATTCAA
AAAGTATTCAAAACGGATTATGGAAAGGATTTGATTGAAAATATCAAGAGTGAAACTCGT
GGCAACTTTGAAGATTTACTGGTAGCATTGCTCACACCAACATTGGATTTTTACTGCAAA
GAGATTTATGATGCATGCGCTGGAATTGGTACAGATGAAGACGCTTTGGTTGAGGTCTTT
TGCACACTCTCAAATAACGAGATTACCATGATTAGAGATCGTTATCGTGAGCTTTATGGA
AAGGATTTGGAAAATGTTTTAATTGGTGAAACATCGGGAAATTTCAAGCGTTTACTTGTT
TCTCTTGTGAATGCAAATCGTGACGAATCTGGAATTACTGATATTGAGAAAGCTAAAGCT
GATGCTACTGCTTTATTGCGTGCTGGTGAGCTTCGTGCGGGAACTGACGAATCAACATTC
AATTCTATCTTGTGCCAACGCAATTATCAACAATTGAAATTAATTTTCGATGAATATGAA
AAGATGACTGGCCATAGCTTTGCAAAAGCAATTGAAAATGAATTTTCCGGTGACATCAAA
GATGGTTTTCTTGCCATATTCCAAGTTATTACTAACAAACACGAATTCTTTGCTCGTCGT
TTGCACAAATCAATGGCTGGTTTAGGCACTACAGACAAACAACTCATTCGTTTGGTTGTT
ACACGCTGTGAAATTGACATGGGCGAAATCAAAGAAGCTTTCCAGCGACTTTTTGGCGAA
TCTTTACGTGACATGATTAAAGGTGATACCTCAGGTTCTTATAAGCACGCATTGTATGCT
TTAATTGGAGAACAACGAAGCTCTTAA

>g12339.t1 Gene=g12339 Length=408
MFPFGSGATSTSIKISPYCDKFVNSNEGYLPMRIKVPFGAGYFNDNNSISISTKQNQFYD
NYQQSQSLRLYPDLNDFSPHFHSTSVYACQGTPTVLPKENFDAHADSAALRKAMKGWGCN
DEELIEILCRRSNDQRQQIQKVFKTDYGKDLIENIKSETRGNFEDLLVALLTPTLDFYCK
EIYDACAGIGTDEDALVEVFCTLSNNEITMIRDRYRELYGKDLENVLIGETSGNFKRLLV
SLVNANRDESGITDIEKAKADATALLRAGELRAGTDESTFNSILCQRNYQQLKLIFDEYE
KMTGHSFAKAIENEFSGDIKDGFLAIFQVITNKHEFFARRLHKSMAGLGTTDKQLIRLVV
TRCEIDMGEIKEAFQRLFGESLRDMIKGDTSGSYKHALYALIGEQRSS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g12339.t1 Gene3D G3DSA:1.10.220.10 - 100 172 5.4E-29
17 g12339.t1 Gene3D G3DSA:1.10.220.10 - 175 248 5.1E-23
14 g12339.t1 Gene3D G3DSA:1.10.220.10 - 249 332 6.3E-27
15 g12339.t1 Gene3D G3DSA:1.10.220.10 - 334 404 4.5E-25
5 g12339.t1 PANTHER PTHR10502 ANNEXIN 91 403 7.1E-132
6 g12339.t1 PANTHER PTHR10502:SF226 ANNEXIN 91 403 7.1E-132
12 g12339.t1 PRINTS PR00196 Annexin family signature 115 137 2.8E-45
11 g12339.t1 PRINTS PR00196 Annexin family signature 155 171 2.8E-45
8 g12339.t1 PRINTS PR00196 Annexin family signature 182 203 2.8E-45
9 g12339.t1 PRINTS PR00196 Annexin family signature 265 291 2.8E-45
10 g12339.t1 PRINTS PR00196 Annexin family signature 345 365 2.8E-45
7 g12339.t1 PRINTS PR00196 Annexin family signature 389 402 2.8E-45
3 g12339.t1 Pfam PF00191 Annexin 106 170 2.5E-25
4 g12339.t1 Pfam PF00191 Annexin 180 242 9.7E-19
1 g12339.t1 Pfam PF00191 Annexin 261 326 5.2E-22
2 g12339.t1 Pfam PF00191 Annexin 336 401 2.2E-19
18 g12339.t1 ProSitePatterns PS00223 Annexin repeat signature. 349 401 -
25 g12339.t1 ProSiteProfiles PS51897 Annexin repeat profile. 101 172 29.311
26 g12339.t1 ProSiteProfiles PS51897 Annexin repeat profile. 173 244 23.3
24 g12339.t1 ProSiteProfiles PS51897 Annexin repeat profile. 256 328 23.829
23 g12339.t1 ProSiteProfiles PS51897 Annexin repeat profile. 332 403 24.772
22 g12339.t1 SMART SM00335 annex3 118 170 2.5E-22
19 g12339.t1 SMART SM00335 annex3 190 242 2.7E-19
20 g12339.t1 SMART SM00335 annex3 274 326 1.2E-17
21 g12339.t1 SMART SM00335 annex3 349 401 1.7E-18
13 g12339.t1 SUPERFAMILY SSF47874 Annexin 79 403 6.55E-116

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values