Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12339 g12339.t2 TSS g12339.t2 22638900 22638900
chr_1 g12339 g12339.t2 isoform g12339.t2 22639743 22641216
chr_1 g12339 g12339.t2 exon g12339.t2.exon1 22639743 22639754
chr_1 g12339 g12339.t2 cds g12339.t2.CDS1 22639743 22639754
chr_1 g12339 g12339.t2 exon g12339.t2.exon2 22640194 22640872
chr_1 g12339 g12339.t2 cds g12339.t2.CDS2 22640194 22640872
chr_1 g12339 g12339.t2 exon g12339.t2.exon3 22640939 22641216
chr_1 g12339 g12339.t2 cds g12339.t2.CDS3 22640939 22641216
chr_1 g12339 g12339.t2 TTS g12339.t2 22641592 22641592

Sequences

>g12339.t2 Gene=g12339 Length=969
ATGTTTCCATTCGGTACTCCTACTGTTCTACCAAAAGAAAACTTTGATGCTCATGCTGAT
TCTGCAGCTTTACGAAAAGCAATGAAGGGCTGGGGTTGCAATGACGAAGAGTTAATTGAA
ATTTTATGTCGTCGCAGCAATGATCAACGTCAACAGATTCAAAAAGTATTCAAAACGGAT
TATGGAAAGGATTTGATTGAAAATATCAAGAGTGAAACTCGTGGCAACTTTGAAGATTTA
CTGGTAGCATTGCTCACACCAACATTGGATTTTTACTGCAAAGAGATTTATGATGCATGC
GCTGGAATTGGTACAGATGAAGACGCTTTGGTTGAGGTCTTTTGCACACTCTCAAATAAC
GAGATTACCATGATTAGAGATCGTTATCGTGAGCTTTATGGAAAGGATTTGGAAAATGTT
TTAATTGGTGAAACATCGGGAAATTTCAAGCGTTTACTTGTTTCTCTTGTGAATGCAAAT
CGTGACGAATCTGGAATTACTGATATTGAGAAAGCTAAAGCTGATGCTACTGCTTTATTG
CGTGCTGGTGAGCTTCGTGCGGGAACTGACGAATCAACATTCAATTCTATCTTGTGCCAA
CGCAATTATCAACAATTGAAATTAATTTTCGATGAATATGAAAAGATGACTGGCCATAGC
TTTGCAAAAGCAATTGAAAATGAATTTTCCGGTGACATCAAAGATGGTTTTCTTGCCATA
TTCCAAGTTATTACTAACAAACACGAATTCTTTGCTCGTCGTTTGCACAAATCAATGGCT
GGTTTAGGCACTACAGACAAACAACTCATTCGTTTGGTTGTTACACGCTGTGAAATTGAC
ATGGGCGAAATCAAAGAAGCTTTCCAGCGACTTTTTGGCGAATCTTTACGTGACATGATT
AAAGGTGATACCTCAGGTTCTTATAAGCACGCATTGTATGCTTTAATTGGAGAACAACGA
AGCTCTTAA

>g12339.t2 Gene=g12339 Length=322
MFPFGTPTVLPKENFDAHADSAALRKAMKGWGCNDEELIEILCRRSNDQRQQIQKVFKTD
YGKDLIENIKSETRGNFEDLLVALLTPTLDFYCKEIYDACAGIGTDEDALVEVFCTLSNN
EITMIRDRYRELYGKDLENVLIGETSGNFKRLLVSLVNANRDESGITDIEKAKADATALL
RAGELRAGTDESTFNSILCQRNYQQLKLIFDEYEKMTGHSFAKAIENEFSGDIKDGFLAI
FQVITNKHEFFARRLHKSMAGLGTTDKQLIRLVVTRCEIDMGEIKEAFQRLFGESLRDMI
KGDTSGSYKHALYALIGEQRSS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g12339.t2 Gene3D G3DSA:1.10.220.10 - 14 86 3.6E-29
17 g12339.t2 Gene3D G3DSA:1.10.220.10 - 89 162 3.4E-23
16 g12339.t2 Gene3D G3DSA:1.10.220.10 - 163 246 4.2E-27
14 g12339.t2 Gene3D G3DSA:1.10.220.10 - 248 318 3.1E-25
5 g12339.t2 PANTHER PTHR10502 ANNEXIN 7 317 1.0E-131
6 g12339.t2 PANTHER PTHR10502:SF226 ANNEXIN 7 317 1.0E-131
9 g12339.t2 PRINTS PR00196 Annexin family signature 29 51 8.5E-46
8 g12339.t2 PRINTS PR00196 Annexin family signature 69 85 8.5E-46
12 g12339.t2 PRINTS PR00196 Annexin family signature 96 117 8.5E-46
10 g12339.t2 PRINTS PR00196 Annexin family signature 179 205 8.5E-46
7 g12339.t2 PRINTS PR00196 Annexin family signature 259 279 8.5E-46
11 g12339.t2 PRINTS PR00196 Annexin family signature 303 316 8.5E-46
2 g12339.t2 Pfam PF00191 Annexin 20 84 1.7E-25
4 g12339.t2 Pfam PF00191 Annexin 94 156 6.7E-19
1 g12339.t2 Pfam PF00191 Annexin 175 240 3.6E-22
3 g12339.t2 Pfam PF00191 Annexin 250 315 1.5E-19
18 g12339.t2 ProSitePatterns PS00223 Annexin repeat signature. 263 315 -
25 g12339.t2 ProSiteProfiles PS51897 Annexin repeat profile. 15 86 29.311
23 g12339.t2 ProSiteProfiles PS51897 Annexin repeat profile. 87 158 23.3
24 g12339.t2 ProSiteProfiles PS51897 Annexin repeat profile. 170 242 23.829
26 g12339.t2 ProSiteProfiles PS51897 Annexin repeat profile. 246 317 24.772
21 g12339.t2 SMART SM00335 annex3 32 84 2.5E-22
22 g12339.t2 SMART SM00335 annex3 104 156 2.7E-19
20 g12339.t2 SMART SM00335 annex3 188 240 1.2E-17
19 g12339.t2 SMART SM00335 annex3 263 315 1.7E-18
13 g12339.t2 SUPERFAMILY SSF47874 Annexin 4 317 3.4E-115

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values