Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12339 g12339.t4 TSS g12339.t4 22638900 22638900
chr_1 g12339 g12339.t4 isoform g12339.t4 22639743 22640838
chr_1 g12339 g12339.t4 exon g12339.t4.exon1 22639743 22640105
chr_1 g12339 g12339.t4 cds g12339.t4.CDS1 22639929 22640105
chr_1 g12339 g12339.t4 exon g12339.t4.exon2 22640194 22640838
chr_1 g12339 g12339.t4 cds g12339.t4.CDS2 22640194 22640838
chr_1 g12339 g12339.t4 TTS g12339.t4 22641592 22641592

Sequences

>g12339.t4 Gene=g12339 Length=1008
ATGTTTCCATTCGTAAGTATCCTAAAAATTTATATTAAAAACCATGAATGTAAAATTCGC
TAGCTTTTGTGGATTCAAAGTGGAATTTTTACATGCAATTTCTAGGGATCAGGTGCTACT
TCTACCTCAATAAAAATTTCACCATACTGTGATAAATTTGTTAATAGTAATGAAGGCTAT
CTTCCCATGAGAATTAAAGTTCCTTTTGGAGCTGGCTATTTTAATGACAATAATTCCATT
TCTATTTCTACAAAACAAAATCAATTTTATGATAATTACCAACAATCTCAATCTCTAAGG
CTTTATCCAGACTTGAATGATTTTTCTCCACATTTTCATTCAACAAGTGTTTACGCTTGT
CAGGGTACTCCTACTGTTCTACCAAAAGAAAACTTTGATGCTCATGCTGATTCTGCAGCT
TTACGAAAAGCAATGAAGGGCTGGGGTTGCAATGACGAAGAGTTAATTGAAATTTTATGT
CGTCGCAGCAATGATCAACGTCAACAGATTCAAAAAGTATTCAAAACGGATTATGGAAAG
GATTTGATTGAAAATATCAAGAGTGAAACTCGTGGCAACTTTGAAGATTTACTGGTAGCA
TTGCTCACACCAACATTGGATTTTTACTGCAAAGAGATTTATGATGCATGCGCTGGAATT
GGTACAGATGAAGACGCTTTGGTTGAGGTCTTTTGCACACTCTCAAATAACGAGATTACC
ATGATTAGAGATCGTTATCGTGAGCTTTATGGAAAGGATTTGGAAAATGTTTTAATTGGT
GAAACATCGGGAAATTTCAAGCGTTTACTTGTTTCTCTTGTGAATGCAAATCGTGACGAA
TCTGGAATTACTGATATTGAGAAAGCTAAAGCTGATGCTACTGCTTTATTGCGTGCTGGT
GAGCTTCGTGCGGGAACTGACGAATCAACATTCAATTCTATCTTGTGCCAACGCAATTAT
CAACAATTGAAATTAATTTTCGATGAATATGAAAAGATGACTGGCCAT

>g12339.t4 Gene=g12339 Length=274
MRIKVPFGAGYFNDNNSISISTKQNQFYDNYQQSQSLRLYPDLNDFSPHFHSTSVYACQG
TPTVLPKENFDAHADSAALRKAMKGWGCNDEELIEILCRRSNDQRQQIQKVFKTDYGKDL
IENIKSETRGNFEDLLVALLTPTLDFYCKEIYDACAGIGTDEDALVEVFCTLSNNEITMI
RDRYRELYGKDLENVLIGETSGNFKRLLVSLVNANRDESGITDIEKAKADATALLRAGEL
RAGTDESTFNSILCQRNYQQLKLIFDEYEKMTGH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g12339.t4 Gene3D G3DSA:1.10.220.10 - 69 141 0.000
14 g12339.t4 Gene3D G3DSA:1.10.220.10 - 144 217 0.000
16 g12339.t4 Gene3D G3DSA:1.10.220.10 - 218 274 0.000
4 g12339.t4 PANTHER PTHR10502 ANNEXIN 60 271 0.000
5 g12339.t4 PANTHER PTHR10502:SF226 ANNEXIN 60 271 0.000
8 g12339.t4 PRINTS PR00196 Annexin family signature 84 106 0.000
7 g12339.t4 PRINTS PR00196 Annexin family signature 124 140 0.000
9 g12339.t4 PRINTS PR00196 Annexin family signature 151 172 0.000
6 g12339.t4 PRINTS PR00196 Annexin family signature 234 260 0.000
3 g12339.t4 Pfam PF00191 Annexin 75 139 0.000
2 g12339.t4 Pfam PF00191 Annexin 149 211 0.000
1 g12339.t4 Pfam PF00191 Annexin 230 274 0.000
19 g12339.t4 ProSiteProfiles PS51897 Annexin repeat profile. 70 141 29.311
18 g12339.t4 ProSiteProfiles PS51897 Annexin repeat profile. 142 213 23.300
17 g12339.t4 ProSiteProfiles PS51897 Annexin repeat profile. 225 274 17.964
11 g12339.t4 SMART SM00335 annex3 87 139 0.000
12 g12339.t4 SMART SM00335 annex3 159 211 0.000
13 g12339.t4 SMART SM00335 annex3 243 274 0.100
10 g12339.t4 SUPERFAMILY SSF47874 Annexin 47 274 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed