Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12339 g12339.t6 isoform g12339.t6 22640194 22640814
chr_1 g12339 g12339.t6 exon g12339.t6.exon1 22640194 22640814
chr_1 g12339 g12339.t6 cds g12339.t6.CDS1 22640263 22640814
chr_1 g12339 g12339.t6 TTS g12339.t6 22641592 22641592
chr_1 g12339 g12339.t6 TSS g12339.t6 NA NA

Sequences

>g12339.t6 Gene=g12339 Length=621
GGTACTCCTACTGTTCTACCAAAAGAAAACTTTGATGCTCATGCTGATTCTGCAGCTTTA
CGAAAAGCAATGAAGGGCTGGGGTTGCAATGACGAAGAGTTAATTGAAATTTTATGTCGT
CGCAGCAATGATCAACGTCAACAGATTCAAAAAGTATTCAAAACGGATTATGGAAAGGAT
TTGATTGAAAATATCAAGAGTGAAACTCGTGGCAACTTTGAAGATTTACTGGTAGCATTG
CTCACACCAACATTGGATTTTTACTGCAAAGAGATTTATGATGCATGCGCTGGAATTGGT
ACAGATGAAGACGCTTTGGTTGAGGTCTTTTGCACACTCTCAAATAACGAGATTACCATG
ATTAGAGATCGTTATCGTGAGCTTTATGGAAAGGATTTGGAAAATGTTTTAATTGGTGAA
ACATCGGGAAATTTCAAGCGTTTACTTGTTTCTCTTGTGAATGCAAATCGTGACGAATCT
GGAATTACTGATATTGAGAAAGCTAAAGCTGATGCTACTGCTTTATTGCGTGCTGGTGAG
CTTCGTGCGGGAACTGACGAATCAACATTCAATTCTATCTTGTGCCAACGCAATTATCAA
CAATTGAAATTAATTTTCGAT

>g12339.t6 Gene=g12339 Length=184
MKGWGCNDEELIEILCRRSNDQRQQIQKVFKTDYGKDLIENIKSETRGNFEDLLVALLTP
TLDFYCKEIYDACAGIGTDEDALVEVFCTLSNNEITMIRDRYRELYGKDLENVLIGETSG
NFKRLLVSLVNANRDESGITDIEKAKADATALLRAGELRAGTDESTFNSILCQRNYQQLK
LIFD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g12339.t6 Gene3D G3DSA:1.10.220.10 - 1 59 0.000
15 g12339.t6 Gene3D G3DSA:1.10.220.10 - 62 135 0.000
13 g12339.t6 Gene3D G3DSA:1.10.220.10 - 136 184 0.000
4 g12339.t6 PANTHER PTHR10502 ANNEXIN 1 184 0.000
5 g12339.t6 PANTHER PTHR10502:SF226 ANNEXIN 1 184 0.000
8 g12339.t6 PRINTS PR00196 Annexin family signature 2 24 0.000
7 g12339.t6 PRINTS PR00196 Annexin family signature 42 58 0.000
9 g12339.t6 PRINTS PR00196 Annexin family signature 69 90 0.000
6 g12339.t6 PRINTS PR00196 Annexin family signature 152 178 0.000
3 g12339.t6 Pfam PF00191 Annexin 1 57 0.000
2 g12339.t6 Pfam PF00191 Annexin 67 129 0.000
1 g12339.t6 Pfam PF00191 Annexin 148 184 0.000
17 g12339.t6 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 25.684
16 g12339.t6 ProSiteProfiles PS51897 Annexin repeat profile. 60 131 23.300
18 g12339.t6 ProSiteProfiles PS51897 Annexin repeat profile. 143 184 14.582
11 g12339.t6 SMART SM00335 annex3 5 57 0.000
12 g12339.t6 SMART SM00335 annex3 77 129 0.000
10 g12339.t6 SUPERFAMILY SSF47874 Annexin 1 184 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed