Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12339 g12339.t7 isoform g12339.t7 22640276 22641216
chr_1 g12339 g12339.t7 exon g12339.t7.exon1 22640276 22640872
chr_1 g12339 g12339.t7 cds g12339.t7.CDS1 22640551 22640872
chr_1 g12339 g12339.t7 exon g12339.t7.exon2 22640939 22641216
chr_1 g12339 g12339.t7 cds g12339.t7.CDS2 22640939 22641216
chr_1 g12339 g12339.t7 TTS g12339.t7 22641592 22641592
chr_1 g12339 g12339.t7 TSS g12339.t7 NA NA

Sequences

>g12339.t7 Gene=g12339 Length=875
GTTGCAATGACGAAGAGTTAATTGAAATTTTATGTCGTCGCAGCAATGATCAACGTCAAC
AGATTCAAAAAGTATTCAAAACGGATTATGGAAAGGATTTGATTGAAAATATCAAGAGTG
AAACTCGTGGCAACTTTGAAGATTTACTGGTAGCATTGCTCACACCAACATTGGATTTTT
ACTGCAAAGAGATTTATGATGCATGCGCTGGAATTGGTACAGATGAAGACGCTTTGGTTG
AGGTCTTTTGCACACTCTCAAATAACGAGATTACCATGATTAGAGATCGTTATCGTGAGC
TTTATGGAAAGGATTTGGAAAATGTTTTAATTGGTGAAACATCGGGAAATTTCAAGCGTT
TACTTGTTTCTCTTGTGAATGCAAATCGTGACGAATCTGGAATTACTGATATTGAGAAAG
CTAAAGCTGATGCTACTGCTTTATTGCGTGCTGGTGAGCTTCGTGCGGGAACTGACGAAT
CAACATTCAATTCTATCTTGTGCCAACGCAATTATCAACAATTGAAATTAATTTTCGATG
AATATGAAAAGATGACTGGCCATAGCTTTGCAAAAGCAATTGAAAATGAATTTTCCGGTG
ACATCAAAGATGGTTTTCTTGCCATATTCCAAGTTATTACTAACAAACACGAATTCTTTG
CTCGTCGTTTGCACAAATCAATGGCTGGTTTAGGCACTACAGACAAACAACTCATTCGTT
TGGTTGTTACACGCTGTGAAATTGACATGGGCGAAATCAAAGAAGCTTTCCAGCGACTTT
TTGGCGAATCTTTACGTGACATGATTAAAGGTGATACCTCAGGTTCTTATAAGCACGCAT
TGTATGCTTTAATTGGAGAACAACGAAGCTCTTAA

>g12339.t7 Gene=g12339 Length=199
MIRDRYRELYGKDLENVLIGETSGNFKRLLVSLVNANRDESGITDIEKAKADATALLRAG
ELRAGTDESTFNSILCQRNYQQLKLIFDEYEKMTGHSFAKAIENEFSGDIKDGFLAIFQV
ITNKHEFFARRLHKSMAGLGTTDKQLIRLVVTRCEIDMGEIKEAFQRLFGESLRDMIKGD
TSGSYKHALYALIGEQRSS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g12339.t7 Gene3D G3DSA:1.10.220.10 - 1 39 1.1E-9
11 g12339.t7 Gene3D G3DSA:1.10.220.10 - 40 123 1.5E-27
10 g12339.t7 Gene3D G3DSA:1.10.220.10 - 125 195 1.2E-25
4 g12339.t7 PANTHER PTHR10502 ANNEXIN 2 194 1.3E-81
5 g12339.t7 PANTHER PTHR10502:SF226 ANNEXIN 2 194 1.3E-81
7 g12339.t7 PRINTS PR00196 Annexin family signature 62 84 1.3E-6
6 g12339.t7 PRINTS PR00196 Annexin family signature 132 153 1.3E-6
1 g12339.t7 Pfam PF00191 Annexin 2 33 9.6E-8
2 g12339.t7 Pfam PF00191 Annexin 52 117 1.5E-22
3 g12339.t7 Pfam PF00191 Annexin 127 192 6.1E-20
12 g12339.t7 ProSitePatterns PS00223 Annexin repeat signature. 140 192 -
18 g12339.t7 ProSiteProfiles PS51897 Annexin repeat profile. 1 35 13.501
17 g12339.t7 ProSiteProfiles PS51897 Annexin repeat profile. 47 119 23.829
16 g12339.t7 ProSiteProfiles PS51897 Annexin repeat profile. 123 194 24.772
14 g12339.t7 SMART SM00335 annex3 1 33 0.016
15 g12339.t7 SMART SM00335 annex3 65 117 1.2E-17
13 g12339.t7 SMART SM00335 annex3 140 192 1.7E-18
8 g12339.t7 SUPERFAMILY SSF47874 Annexin 2 195 1.96E-69

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values