Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12340 g12340.t18 TSS g12340.t18 22642413 22642413
chr_1 g12340 g12340.t18 isoform g12340.t18 22642537 22644146
chr_1 g12340 g12340.t18 exon g12340.t18.exon1 22642537 22642883
chr_1 g12340 g12340.t18 cds g12340.t18.CDS1 22642662 22642883
chr_1 g12340 g12340.t18 exon g12340.t18.exon2 22642941 22643020
chr_1 g12340 g12340.t18 cds g12340.t18.CDS2 22642941 22643020
chr_1 g12340 g12340.t18 exon g12340.t18.exon3 22643087 22643308
chr_1 g12340 g12340.t18 cds g12340.t18.CDS3 22643087 22643102
chr_1 g12340 g12340.t18 exon g12340.t18.exon4 22643369 22643642
chr_1 g12340 g12340.t18 exon g12340.t18.exon5 22643700 22644146
chr_1 g12340 g12340.t18 TTS g12340.t18 22644285 22644285

Sequences

>g12340.t18 Gene=g12340 Length=1370
ATGTACCCAAATGTAAGTCAATTTTCTTACCAAAATATTAATAAATTGGACTTTTAGGTG
CTTTTTATGCAGAAATATAATATTTATATTTACAGTATCCAAATTCGAATCAACCTTATC
CAAATATGCCACAATATCCAAATCAAATGCCTCCCTATCCGGATAATAATCAACAATATT
TTCCACAAATGCCTGGAATGCCTCAATATCAAATGCAGCCACAATATAATCCCATGCAAC
AGCAGTATCCTCCTCAAATGTCAACAGGACAATTTGATCAAAGTTATCAACAAGTTCATC
ATTATCAACAACAGCAGCAACCAGCGATGAGTGTTCAACTAGCTCGGTCACGACCAACAG
TCACACCAGCAGCTAATTTTGACGCAGCAAATGATGCCTCTATTTTACGGAAGGCTATGA
AAGGTTTGTTTTGGAACAGATGAAGCAGCAATCATAAATGTGTTATGTCGTCGACCATCA
CATCAAAGAATTGAAATTGCAAAAGCATTTAAAACTGCATATGGCAAAGATTTAATTGAA
AATATTCGTAAAGAAACATCAGGAAACTTTGAAAGAGTGTTGGTTGCACTCTTGACACCA
AAAATACAATATTATTGTGAAGAACTGTATGAAGCAATGGAAGGACAAGGCACTGATGAA
GATGTTTTGATTGAAGTTCTGTGTGGTGGGTTGCCTAATAAAGAAGTGCAAGCAATTACT
CAAGAATATCAGAGACTTTATGGAAAAACATTGGAAAATGCTTTGAAAGAGGAAACAAGT
TACAGTTTCAAAAGATTGTTGGTTTCTCTTTCAACTGGTAATCGAGATGAATCTACTCAT
GTTGACTTAAATTCTGCACGAAATGATGCACAAGCTTTGAAGGATGCTGGTGTCAATCGA
TTTGGAACTGATGAATCAGGTTTAATTCAATAGGATTCTTTGCTTGAGAAATTTCCATCA
AATTCGGTTAGTTGCAGAAGAGTATGAGAAAATGACAGGAAACAGCTTGGAGAAAGACAT
TAAGAAAGAATTTAGTGGTGATGTTGAAGAAGGTATGGTTTCTGTATTACGTGCTGCAGT
CAATCAACCGCTATTTTTTGCAAAACGCATTCATAAAGCTGTTGCCGGATTTGGTACTGA
CGATAGAGCATTAATTAGACTTTGCGTCACACGAAGTGAAATCGACATGATTGATATAAA
AGAAGAATATCAAAAGAAATACGGTGAATCTTTGAGAGATGCAATTAAAGGCGATACATC
AGGTGAATAATTAATTGTATACACATAATATAAAATAATTAACTTTATTGACATTCACAG
GTCATTACAAACATGCTCTCTATGTCTTAATTGGAGAAAACAAAAGTTAA

>g12340.t18 Gene=g12340 Length=105
MPQYPNQMPPYPDNNQQYFPQMPGMPQYQMQPQYNPMQQQYPPQMSTGQFDQSYQQVHHY
QQQQQPAMSVQLARSRPTVTPAANFDAANDASILRKAMKGLFWNR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g12340.t18 SUPERFAMILY SSF47874 Annexin 47 101 7e-07

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed