General information for g12340.t19
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Annexin B11.
Parent gene
- The parent gene g12340 is located on chr_1: 22643797..22644146 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12340 | g12340.t19 | TSS | g12340.t19 | 22642413 | 22642413 |
| chr_1 | g12340 | g12340.t19 | isoform | g12340.t19 | 22642537 | 22644146 |
| chr_1 | g12340 | g12340.t19 | exon | g12340.t19.exon1 | 22642537 | 22642883 |
| chr_1 | g12340 | g12340.t19 | exon | g12340.t19.exon2 | 22642941 | 22643020 |
| chr_1 | g12340 | g12340.t19 | exon | g12340.t19.exon3 | 22643087 | 22643308 |
| chr_1 | g12340 | g12340.t19 | exon | g12340.t19.exon4 | 22643369 | 22643642 |
| chr_1 | g12340 | g12340.t19 | exon | g12340.t19.exon5 | 22643700 | 22644038 |
| chr_1 | g12340 | g12340.t19 | cds | g12340.t19.CDS1 | 22643768 | 22644038 |
| chr_1 | g12340 | g12340.t19 | exon | g12340.t19.exon6 | 22644097 | 22644146 |
| chr_1 | g12340 | g12340.t19 | cds | g12340.t19.CDS2 | 22644097 | 22644146 |
| chr_1 | g12340 | g12340.t19 | TTS | g12340.t19 | 22644285 | 22644285 |
Sequences
>g12340.t19 Gene=g12340 Length=1312
ATGTACCCAAATGTAAGTCAATTTTCTTACCAAAATATTAATAAATTGGACTTTTAGGTG
CTTTTTATGCAGAAATATAATATTTATATTTACAGTATCCAAATTCGAATCAACCTTATC
CAAATATGCCACAATATCCAAATCAAATGCCTCCCTATCCGGATAATAATCAACAATATT
TTCCACAAATGCCTGGAATGCCTCAATATCAAATGCAGCCACAATATAATCCCATGCAAC
AGCAGTATCCTCCTCAAATGTCAACAGGACAATTTGATCAAAGTTATCAACAAGTTCATC
ATTATCAACAACAGCAGCAACCAGCGATGAGTGTTCAACTAGCTCGGTCACGACCAACAG
TCACACCAGCAGCTAATTTTGACGCAGCAAATGATGCCTCTATTTTACGGAAGGCTATGA
AAGGTTTGTTTTGGAACAGATGAAGCAGCAATCATAAATGTGTTATGTCGTCGACCATCA
CATCAAAGAATTGAAATTGCAAAAGCATTTAAAACTGCATATGGCAAAGATTTAATTGAA
AATATTCGTAAAGAAACATCAGGAAACTTTGAAAGAGTGTTGGTTGCACTCTTGACACCA
AAAATACAATATTATTGTGAAGAACTGTATGAAGCAATGGAAGGACAAGGCACTGATGAA
GATGTTTTGATTGAAGTTCTGTGTGGTGGGTTGCCTAATAAAGAAGTGCAAGCAATTACT
CAAGAATATCAGAGACTTTATGGAAAAACATTGGAAAATGCTTTGAAAGAGGAAACAAGT
TACAGTTTCAAAAGATTGTTGGTTTCTCTTTCAACTGGTAATCGAGATGAATCTACTCAT
GTTGACTTAAATTCTGCACGAAATGATGCACAAGCTTTGAAGGATGCTGGTGTCAATCGA
TTTGGAACTGATGAATCAGGTTTAATTCAATAGGATTCTTTGCTTGAGAAATTTCCATCA
AATTCGGTTAGTTGCAGAAGAGTATGAGAAAATGACAGGAAACAGCTTGGAGAAAGACAT
TAAGAAAGAATTTAGTGGTGATGTTGAAGAAGGTATGGTTTCTGTATTACGTGCTGCAGT
CAATCAACCGCTATTTTTTGCAAAACGCATTCATAAAGCTGTTGCCGGATTTGGTACTGA
CGATAGAGCATTAATTAGACTTTGCGTCACACGAAGTGAAATCGACATGATTGATATAAA
AGAAGAATATCAAAAGAAATACGGTGAATCTTTGAGAGATGCAATTAAAGGCGATACATC
AGGTCATTACAAACATGCTCTCTATGTCTTAATTGGAGAAAACAAAAGTTAA
>g12340.t19 Gene=g12340 Length=106
MTGNSLEKDIKKEFSGDVEEGMVSVLRAAVNQPLFFAKRIHKAVAGFGTDDRALIRLCVT
RSEIDMIDIKEEYQKKYGESLRDAIKGDTSGHYKHALYVLIGENKS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g12340.t19 | Gene3D | G3DSA:1.10.220.10 | - | 1 | 31 | 0.000029 |
| 7 | g12340.t19 | Gene3D | G3DSA:1.10.220.10 | - | 33 | 103 | 0.000000 |
| 3 | g12340.t19 | PANTHER | PTHR10502 | ANNEXIN | 6 | 102 | 0.000000 |
| 4 | g12340.t19 | PANTHER | PTHR10502:SF226 | ANNEXIN | 6 | 102 | 0.000000 |
| 2 | g12340.t19 | Pfam | PF00191 | Annexin | 1 | 24 | 0.000011 |
| 1 | g12340.t19 | Pfam | PF00191 | Annexin | 35 | 99 | 0.000000 |
| 9 | g12340.t19 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 1 | 27 | 12.374000 |
| 10 | g12340.t19 | ProSiteProfiles | PS51897 | Annexin repeat profile. | 31 | 102 | 26.205000 |
| 6 | g12340.t19 | SMART | SM00335 | annex3 | 48 | 100 | 0.000000 |
| 5 | g12340.t19 | SUPERFAMILY | SSF47874 | Annexin | 1 | 104 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005544 | calcium-dependent phospholipid binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed