Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12340 g12340.t20 TSS g12340.t20 22642413 22642413
chr_1 g12340 g12340.t20 isoform g12340.t20 22642537 22644146
chr_1 g12340 g12340.t20 exon g12340.t20.exon1 22642537 22642883
chr_1 g12340 g12340.t20 cds g12340.t20.CDS1 22642662 22642883
chr_1 g12340 g12340.t20 exon g12340.t20.exon2 22642941 22643016
chr_1 g12340 g12340.t20 cds g12340.t20.CDS2 22642941 22643016
chr_1 g12340 g12340.t20 exon g12340.t20.exon3 22643087 22643308
chr_1 g12340 g12340.t20 cds g12340.t20.CDS3 22643087 22643308
chr_1 g12340 g12340.t20 exon g12340.t20.exon4 22643369 22643642
chr_1 g12340 g12340.t20 cds g12340.t20.CDS4 22643369 22643642
chr_1 g12340 g12340.t20 exon g12340.t20.exon5 22643700 22644038
chr_1 g12340 g12340.t20 cds g12340.t20.CDS5 22643700 22643709
chr_1 g12340 g12340.t20 exon g12340.t20.exon6 22644097 22644146
chr_1 g12340 g12340.t20 TTS g12340.t20 22644285 22644285

Sequences

>g12340.t20 Gene=g12340 Length=1308
ATGTACCCAAATGTAAGTCAATTTTCTTACCAAAATATTAATAAATTGGACTTTTAGGTG
CTTTTTATGCAGAAATATAATATTTATATTTACAGTATCCAAATTCGAATCAACCTTATC
CAAATATGCCACAATATCCAAATCAAATGCCTCCCTATCCGGATAATAATCAACAATATT
TTCCACAAATGCCTGGAATGCCTCAATATCAAATGCAGCCACAATATAATCCCATGCAAC
AGCAGTATCCTCCTCAAATGTCAACAGGACAATTTGATCAAAGTTATCAACAAGTTCATC
ATTATCAACAACAGCAGCAACCAGCGATGAGTGTTCAACTAGCTCGGTCACGACCAACAG
TCACACCAGCAGCTAATTTTGACGCAGCAAATGATGCCTCTATTTTACGGAAGGCTATGA
AAGGTTTTGGAACAGATGAAGCAGCAATCATAAATGTGTTATGTCGTCGACCATCACATC
AAAGAATTGAAATTGCAAAAGCATTTAAAACTGCATATGGCAAAGATTTAATTGAAAATA
TTCGTAAAGAAACATCAGGAAACTTTGAAAGAGTGTTGGTTGCACTCTTGACACCAAAAA
TACAATATTATTGTGAAGAACTGTATGAAGCAATGGAAGGACAAGGCACTGATGAAGATG
TTTTGATTGAAGTTCTGTGTGGTGGGTTGCCTAATAAAGAAGTGCAAGCAATTACTCAAG
AATATCAGAGACTTTATGGAAAAACATTGGAAAATGCTTTGAAAGAGGAAACAAGTTACA
GTTTCAAAAGATTGTTGGTTTCTCTTTCAACTGGTAATCGAGATGAATCTACTCATGTTG
ACTTAAATTCTGCACGAAATGATGCACAAGCTTTGAAGGATGCTGGTGTCAATCGATTTG
GAACTGATGAATCAGGTTTAATTCAATAGGATTCTTTGCTTGAGAAATTTCCATCAAATT
CGGTTAGTTGCAGAAGAGTATGAGAAAATGACAGGAAACAGCTTGGAGAAAGACATTAAG
AAAGAATTTAGTGGTGATGTTGAAGAAGGTATGGTTTCTGTATTACGTGCTGCAGTCAAT
CAACCGCTATTTTTTGCAAAACGCATTCATAAAGCTGTTGCCGGATTTGGTACTGACGAT
AGAGCATTAATTAGACTTTGCGTCACACGAAGTGAAATCGACATGATTGATATAAAAGAA
GAATATCAAAAGAAATACGGTGAATCTTTGAGAGATGCAATTAAAGGCGATACATCAGGT
CATTACAAACATGCTCTCTATGTCTTAATTGGAGAAAACAAAAGTTAA

>g12340.t20 Gene=g12340 Length=267
MPQYPNQMPPYPDNNQQYFPQMPGMPQYQMQPQYNPMQQQYPPQMSTGQFDQSYQQVHHY
QQQQQPAMSVQLARSRPTVTPAANFDAANDASILRKAMKGFGTDEAAIINVLCRRPSHQR
IEIAKAFKTAYGKDLIENIRKETSGNFERVLVALLTPKIQYYCEELYEAMEGQGTDEDVL
IEVLCGGLPNKEVQAITQEYQRLYGKTLENALKEETSYSFKRLLVSLSTGNRDESTHVDL
NSARNDAQALKDAGVNRFGTDESGLIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g12340.t20 Gene3D G3DSA:1.10.220.10 - 84 156 6.6E-28
10 g12340.t20 Gene3D G3DSA:1.10.220.10 - 157 233 2.1E-22
12 g12340.t20 Gene3D G3DSA:1.10.220.10 - 234 267 1.5E-5
3 g12340.t20 PANTHER PTHR10502 ANNEXIN 2 263 7.8E-72
4 g12340.t20 PANTHER PTHR10502:SF29 ANNEXIN A11 2 263 7.8E-72
8 g12340.t20 PRINTS PR00196 Annexin family signature 99 121 4.7E-27
6 g12340.t20 PRINTS PR00196 Annexin family signature 139 155 4.7E-27
7 g12340.t20 PRINTS PR00196 Annexin family signature 166 187 4.7E-27
5 g12340.t20 PRINTS PR00196 Annexin family signature 250 267 4.7E-27
1 g12340.t20 Pfam PF00191 Annexin 90 154 1.8E-24
2 g12340.t20 Pfam PF00191 Annexin 162 227 4.6E-17
13 g12340.t20 ProSitePatterns PS00223 Annexin repeat signature. 102 154 -
18 g12340.t20 ProSiteProfiles PS51897 Annexin repeat profile. 85 156 29.027
16 g12340.t20 ProSiteProfiles PS51897 Annexin repeat profile. 157 229 21.099
17 g12340.t20 ProSiteProfiles PS51897 Annexin repeat profile. 241 267 9.706
15 g12340.t20 SMART SM00335 annex3 102 154 1.7E-21
14 g12340.t20 SMART SM00335 annex3 174 227 2.8E-14
9 g12340.t20 SUPERFAMILY SSF47874 Annexin 47 266 3.14E-66

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values