Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12340 g12340.t21 TSS g12340.t21 22642413 22642413
chr_1 g12340 g12340.t21 isoform g12340.t21 22642537 22644146
chr_1 g12340 g12340.t21 exon g12340.t21.exon1 22642537 22642883
chr_1 g12340 g12340.t21 cds g12340.t21.CDS1 22642662 22642883
chr_1 g12340 g12340.t21 exon g12340.t21.exon2 22642941 22643016
chr_1 g12340 g12340.t21 cds g12340.t21.CDS2 22642941 22643016
chr_1 g12340 g12340.t21 exon g12340.t21.exon3 22643087 22643308
chr_1 g12340 g12340.t21 cds g12340.t21.CDS3 22643087 22643308
chr_1 g12340 g12340.t21 exon g12340.t21.exon4 22643369 22643440
chr_1 g12340 g12340.t21 cds g12340.t21.CDS4 22643369 22643440
chr_1 g12340 g12340.t21 exon g12340.t21.exon5 22643505 22643638
chr_1 g12340 g12340.t21 cds g12340.t21.CDS5 22643505 22643569
chr_1 g12340 g12340.t21 exon g12340.t21.exon6 22643700 22644038
chr_1 g12340 g12340.t21 exon g12340.t21.exon7 22644097 22644146
chr_1 g12340 g12340.t21 TTS g12340.t21 22644285 22644285

Sequences

>g12340.t21 Gene=g12340 Length=1240
ATGTACCCAAATGTAAGTCAATTTTCTTACCAAAATATTAATAAATTGGACTTTTAGGTG
CTTTTTATGCAGAAATATAATATTTATATTTACAGTATCCAAATTCGAATCAACCTTATC
CAAATATGCCACAATATCCAAATCAAATGCCTCCCTATCCGGATAATAATCAACAATATT
TTCCACAAATGCCTGGAATGCCTCAATATCAAATGCAGCCACAATATAATCCCATGCAAC
AGCAGTATCCTCCTCAAATGTCAACAGGACAATTTGATCAAAGTTATCAACAAGTTCATC
ATTATCAACAACAGCAGCAACCAGCGATGAGTGTTCAACTAGCTCGGTCACGACCAACAG
TCACACCAGCAGCTAATTTTGACGCAGCAAATGATGCCTCTATTTTACGGAAGGCTATGA
AAGGTTTTGGAACAGATGAAGCAGCAATCATAAATGTGTTATGTCGTCGACCATCACATC
AAAGAATTGAAATTGCAAAAGCATTTAAAACTGCATATGGCAAAGATTTAATTGAAAATA
TTCGTAAAGAAACATCAGGAAACTTTGAAAGAGTGTTGGTTGCACTCTTGACACCAAAAA
TACAATATTATTGTGAAGAACTGTATGAAGCAATGGAAGGACAAGGCACTGATGAAGATG
TTTTGATTGAAGTTCTGTGTGGTGGGTTGCCTAATAAAGAAGTGCAAGCAATTACTCTTT
CAAAAGATTGTTGGTTTCTCTTTCAACTGGTAATCGAGATGAATCTACTCATGTTGACTT
AAATTCTGCACGAAATGATGCACAAGCTTTGAAGGATGCTGGTGTCAATCGATTTGGAAC
TGATGAATCAGAATTCAATAGGATTCTTTGCTTGAGAAATTTCCATCAAATTCGGTTAGT
TGCAGAAGAGTATGAGAAAATGACAGGAAACAGCTTGGAGAAAGACATTAAGAAAGAATT
TAGTGGTGATGTTGAAGAAGGTATGGTTTCTGTATTACGTGCTGCAGTCAATCAACCGCT
ATTTTTTGCAAAACGCATTCATAAAGCTGTTGCCGGATTTGGTACTGACGATAGAGCATT
AATTAGACTTTGCGTCACACGAAGTGAAATCGACATGATTGATATAAAAGAAGAATATCA
AAAGAAATACGGTGAATCTTTGAGAGATGCAATTAAAGGCGATACATCAGGTCATTACAA
ACATGCTCTCTATGTCTTAATTGGAGAAAACAAAAGTTAA

>g12340.t21 Gene=g12340 Length=218
MPQYPNQMPPYPDNNQQYFPQMPGMPQYQMQPQYNPMQQQYPPQMSTGQFDQSYQQVHHY
QQQQQPAMSVQLARSRPTVTPAANFDAANDASILRKAMKGFGTDEAAIINVLCRRPSHQR
IEIAKAFKTAYGKDLIENIRKETSGNFERVLVALLTPKIQYYCEELYEAMEGQGTDEDVL
IEVLCGGLPNKEVQAITLSKDCWFLFQLVIEMNLLMLT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g12340.t21 Gene3D G3DSA:1.10.220.10 - 84 154 4.4E-28
8 g12340.t21 Gene3D G3DSA:1.10.220.10 - 155 198 5.5E-8
2 g12340.t21 PANTHER PTHR10502 ANNEXIN 20 196 7.2E-45
3 g12340.t21 PANTHER PTHR10502:SF214 ANNEXIN A7 20 196 7.2E-45
6 g12340.t21 PRINTS PR00196 Annexin family signature 99 121 8.8E-22
4 g12340.t21 PRINTS PR00196 Annexin family signature 139 155 8.8E-22
5 g12340.t21 PRINTS PR00196 Annexin family signature 166 187 8.8E-22
1 g12340.t21 Pfam PF00191 Annexin 90 154 1.3E-24
10 g12340.t21 ProSitePatterns PS00223 Annexin repeat signature. 102 154 -
12 g12340.t21 ProSiteProfiles PS51897 Annexin repeat profile. 85 156 29.027
11 g12340.t21 SMART SM00335 annex3 102 154 1.7E-21
7 g12340.t21 SUPERFAMILY SSF47874 Annexin 47 187 5.24E-44

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values