Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12340 g12340.t23 TSS g12340.t23 22642413 22642413
chr_1 g12340 g12340.t23 isoform g12340.t23 22642632 22643373
chr_1 g12340 g12340.t23 exon g12340.t23.exon1 22642632 22642883
chr_1 g12340 g12340.t23 cds g12340.t23.CDS1 22642662 22642883
chr_1 g12340 g12340.t23 exon g12340.t23.exon2 22642941 22643016
chr_1 g12340 g12340.t23 cds g12340.t23.CDS2 22642941 22643016
chr_1 g12340 g12340.t23 exon g12340.t23.exon3 22643087 22643308
chr_1 g12340 g12340.t23 cds g12340.t23.CDS3 22643087 22643308
chr_1 g12340 g12340.t23 exon g12340.t23.exon4 22643369 22643373
chr_1 g12340 g12340.t23 cds g12340.t23.CDS4 22643369 22643373
chr_1 g12340 g12340.t23 TTS g12340.t23 22644285 22644285

Sequences

>g12340.t23 Gene=g12340 Length=555
TATCCAAATTCGAATCAACCTTATCCAAATATGCCACAATATCCAAATCAAATGCCTCCC
TATCCGGATAATAATCAACAATATTTTCCACAAATGCCTGGAATGCCTCAATATCAAATG
CAGCCACAATATAATCCCATGCAACAGCAGTATCCTCCTCAAATGTCAACAGGACAATTT
GATCAAAGTTATCAACAAGTTCATCATTATCAACAACAGCAGCAACCAGCGATGAGTGTT
CAACTAGCTCGGTCACGACCAACAGTCACACCAGCAGCTAATTTTGACGCAGCAAATGAT
GCCTCTATTTTACGGAAGGCTATGAAAGGTTTTGGAACAGATGAAGCAGCAATCATAAAT
GTGTTATGTCGTCGACCATCACATCAAAGAATTGAAATTGCAAAAGCATTTAAAACTGCA
TATGGCAAAGATTTAATTGAAAATATTCGTAAAGAAACATCAGGAAACTTTGAAAGAGTG
TTGGTTGCACTCTTGACACCAAAAATACAATATTATTGTGAAGAACTGTATGAAGCAATG
GAAGGACAAGGCACT

>g12340.t23 Gene=g12340 Length=175
MPQYPNQMPPYPDNNQQYFPQMPGMPQYQMQPQYNPMQQQYPPQMSTGQFDQSYQQVHHY
QQQQQPAMSVQLARSRPTVTPAANFDAANDASILRKAMKGFGTDEAAIINVLCRRPSHQR
IEIAKAFKTAYGKDLIENIRKETSGNFERVLVALLTPKIQYYCEELYEAMEGQGT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g12340.t23 Gene3D G3DSA:1.10.220.10 - 84 156 2.8E-28
2 g12340.t23 PANTHER PTHR10502 ANNEXIN 19 175 1.2E-37
3 g12340.t23 PANTHER PTHR10502:SF214 ANNEXIN A7 19 175 1.2E-37
6 g12340.t23 PRINTS PR00196 Annexin family signature 99 121 7.6E-16
4 g12340.t23 PRINTS PR00196 Annexin family signature 139 155 7.6E-16
5 g12340.t23 PRINTS PR00196 Annexin family signature 166 175 7.6E-16
1 g12340.t23 Pfam PF00191 Annexin 90 154 8.0E-25
9 g12340.t23 ProSitePatterns PS00223 Annexin repeat signature. 102 154 -
12 g12340.t23 ProSiteProfiles PS51897 Annexin repeat profile. 85 156 29.027
11 g12340.t23 ProSiteProfiles PS51897 Annexin repeat profile. 157 175 8.618
10 g12340.t23 SMART SM00335 annex3 102 154 1.7E-21
7 g12340.t23 SUPERFAMILY SSF47874 Annexin 47 175 2.09E-37

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values