Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12340 g12340.t26 TSS g12340.t26 22642413 22642413
chr_1 g12340 g12340.t26 isoform g12340.t26 22642632 22644146
chr_1 g12340 g12340.t26 exon g12340.t26.exon1 22642632 22642883
chr_1 g12340 g12340.t26 cds g12340.t26.CDS1 22642662 22642883
chr_1 g12340 g12340.t26 exon g12340.t26.exon2 22642941 22643016
chr_1 g12340 g12340.t26 cds g12340.t26.CDS2 22642941 22643016
chr_1 g12340 g12340.t26 exon g12340.t26.exon3 22643087 22643308
chr_1 g12340 g12340.t26 cds g12340.t26.CDS3 22643087 22643308
chr_1 g12340 g12340.t26 exon g12340.t26.exon4 22643369 22643638
chr_1 g12340 g12340.t26 cds g12340.t26.CDS4 22643369 22643638
chr_1 g12340 g12340.t26 exon g12340.t26.exon5 22643700 22644146
chr_1 g12340 g12340.t26 cds g12340.t26.CDS5 22643700 22644046
chr_1 g12340 g12340.t26 TTS g12340.t26 22644285 22644285

Sequences

>g12340.t26 Gene=g12340 Length=1267
TATCCAAATTCGAATCAACCTTATCCAAATATGCCACAATATCCAAATCAAATGCCTCCC
TATCCGGATAATAATCAACAATATTTTCCACAAATGCCTGGAATGCCTCAATATCAAATG
CAGCCACAATATAATCCCATGCAACAGCAGTATCCTCCTCAAATGTCAACAGGACAATTT
GATCAAAGTTATCAACAAGTTCATCATTATCAACAACAGCAGCAACCAGCGATGAGTGTT
CAACTAGCTCGGTCACGACCAACAGTCACACCAGCAGCTAATTTTGACGCAGCAAATGAT
GCCTCTATTTTACGGAAGGCTATGAAAGGTTTTGGAACAGATGAAGCAGCAATCATAAAT
GTGTTATGTCGTCGACCATCACATCAAAGAATTGAAATTGCAAAAGCATTTAAAACTGCA
TATGGCAAAGATTTAATTGAAAATATTCGTAAAGAAACATCAGGAAACTTTGAAAGAGTG
TTGGTTGCACTCTTGACACCAAAAATACAATATTATTGTGAAGAACTGTATGAAGCAATG
GAAGGACAAGGCACTGATGAAGATGTTTTGATTGAAGTTCTGTGTGGTGGGTTGCCTAAT
AAAGAAGTGCAAGCAATTACTCAAGAATATCAGAGACTTTATGGAAAAACATTGGAAAAT
GCTTTGAAAGAGGAAACAAGTTACAGTTTCAAAAGATTGTTGGTTTCTCTTTCAACTGGT
AATCGAGATGAATCTACTCATGTTGACTTAAATTCTGCACGAAATGATGCACAAGCTTTG
AAGGATGCTGGTGTCAATCGATTTGGAACTGATGAATCAGAATTCAATAGGATTCTTTGC
TTGAGAAATTTCCATCAAATTCGGTTAGTTGCAGAAGAGTATGAGAAAATGACAGGAAAC
AGCTTGGAGAAAGACATTAAGAAAGAATTTAGTGGTGATGTTGAAGAAGGTATGGTTTCT
GTATTACGTGCTGCAGTCAATCAACCGCTATTTTTTGCAAAACGCATTCATAAAGCTGTT
GCCGGATTTGGTACTGACGATAGAGCATTAATTAGACTTTGCGTCACACGAAGTGAAATC
GACATGATTGATATAAAAGAAGAATATCAAAAGAAATACGGTGAATCTTTGAGAGATGCA
ATTAAAGGCGATACATCAGGTGAATAATTAATTGTATACACATAATATAAAATAATTAAC
TTTATTGACATTCACAGGTCATTACAAACATGCTCTCTATGTCTTAATTGGAGAAAACAA
AAGTTAA

>g12340.t26 Gene=g12340 Length=378
MPQYPNQMPPYPDNNQQYFPQMPGMPQYQMQPQYNPMQQQYPPQMSTGQFDQSYQQVHHY
QQQQQPAMSVQLARSRPTVTPAANFDAANDASILRKAMKGFGTDEAAIINVLCRRPSHQR
IEIAKAFKTAYGKDLIENIRKETSGNFERVLVALLTPKIQYYCEELYEAMEGQGTDEDVL
IEVLCGGLPNKEVQAITQEYQRLYGKTLENALKEETSYSFKRLLVSLSTGNRDESTHVDL
NSARNDAQALKDAGVNRFGTDESEFNRILCLRNFHQIRLVAEEYEKMTGNSLEKDIKKEF
SGDVEEGMVSVLRAAVNQPLFFAKRIHKAVAGFGTDDRALIRLCVTRSEIDMIDIKEEYQ
KKYGESLRDAIKGDTSGE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g12340.t26 Gene3D G3DSA:1.10.220.10 - 84 156 1.2E-27
16 g12340.t26 Gene3D G3DSA:1.10.220.10 - 157 233 4.0E-22
15 g12340.t26 Gene3D G3DSA:1.10.220.10 - 234 315 1.4E-27
14 g12340.t26 Gene3D G3DSA:1.10.220.10 - 319 378 1.7E-21
5 g12340.t26 PANTHER PTHR10502 ANNEXIN 2 378 1.4E-121
6 g12340.t26 PANTHER PTHR10502:SF29 ANNEXIN A11 2 378 1.4E-121
11 g12340.t26 PRINTS PR00196 Annexin family signature 99 121 7.7E-48
7 g12340.t26 PRINTS PR00196 Annexin family signature 139 155 7.7E-48
8 g12340.t26 PRINTS PR00196 Annexin family signature 166 187 7.7E-48
10 g12340.t26 PRINTS PR00196 Annexin family signature 250 276 7.7E-48
12 g12340.t26 PRINTS PR00196 Annexin family signature 330 350 7.7E-48
9 g12340.t26 PRINTS PR00196 Annexin family signature 358 373 7.7E-48
2 g12340.t26 Pfam PF00191 Annexin 90 154 3.3E-24
4 g12340.t26 Pfam PF00191 Annexin 162 227 8.3E-17
1 g12340.t26 Pfam PF00191 Annexin 246 310 9.8E-22
3 g12340.t26 Pfam PF00191 Annexin 321 378 2.7E-19
18 g12340.t26 ProSitePatterns PS00223 Annexin repeat signature. 102 154 -
26 g12340.t26 ProSiteProfiles PS51897 Annexin repeat profile. 85 156 29.027
24 g12340.t26 ProSiteProfiles PS51897 Annexin repeat profile. 157 229 21.099
23 g12340.t26 ProSiteProfiles PS51897 Annexin repeat profile. 241 313 26.504
25 g12340.t26 ProSiteProfiles PS51897 Annexin repeat profile. 317 378 23.583
22 g12340.t26 SMART SM00335 annex3 102 154 1.7E-21
19 g12340.t26 SMART SM00335 annex3 174 227 2.8E-14
20 g12340.t26 SMART SM00335 annex3 259 311 3.1E-19
21 g12340.t26 SMART SM00335 annex3 334 378 4.4E-11
13 g12340.t26 SUPERFAMILY SSF47874 Annexin 47 377 4.71E-112

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values