Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12340 g12340.t28 TSS g12340.t28 22642413 22642413
chr_1 g12340 g12340.t28 isoform g12340.t28 22642940 22644146
chr_1 g12340 g12340.t28 exon g12340.t28.exon1 22642940 22643016
chr_1 g12340 g12340.t28 cds g12340.t28.CDS1 22643010 22643016
chr_1 g12340 g12340.t28 exon g12340.t28.exon2 22643087 22643308
chr_1 g12340 g12340.t28 cds g12340.t28.CDS2 22643087 22643308
chr_1 g12340 g12340.t28 exon g12340.t28.exon3 22643369 22643642
chr_1 g12340 g12340.t28 cds g12340.t28.CDS3 22643369 22643642
chr_1 g12340 g12340.t28 exon g12340.t28.exon4 22643700 22644038
chr_1 g12340 g12340.t28 cds g12340.t28.CDS4 22643700 22643709
chr_1 g12340 g12340.t28 exon g12340.t28.exon5 22644097 22644146
chr_1 g12340 g12340.t28 TTS g12340.t28 22644285 22644285

Sequences

>g12340.t28 Gene=g12340 Length=962
GTCACGACCAACAGTCACACCAGCAGCTAATTTTGACGCAGCAAATGATGCCTCTATTTT
ACGGAAGGCTATGAAAGGTTTTGGAACAGATGAAGCAGCAATCATAAATGTGTTATGTCG
TCGACCATCACATCAAAGAATTGAAATTGCAAAAGCATTTAAAACTGCATATGGCAAAGA
TTTAATTGAAAATATTCGTAAAGAAACATCAGGAAACTTTGAAAGAGTGTTGGTTGCACT
CTTGACACCAAAAATACAATATTATTGTGAAGAACTGTATGAAGCAATGGAAGGACAAGG
CACTGATGAAGATGTTTTGATTGAAGTTCTGTGTGGTGGGTTGCCTAATAAAGAAGTGCA
AGCAATTACTCAAGAATATCAGAGACTTTATGGAAAAACATTGGAAAATGCTTTGAAAGA
GGAAACAAGTTACAGTTTCAAAAGATTGTTGGTTTCTCTTTCAACTGGTAATCGAGATGA
ATCTACTCATGTTGACTTAAATTCTGCACGAAATGATGCACAAGCTTTGAAGGATGCTGG
TGTCAATCGATTTGGAACTGATGAATCAGGTTTAATTCAATAGGATTCTTTGCTTGAGAA
ATTTCCATCAAATTCGGTTAGTTGCAGAAGAGTATGAGAAAATGACAGGAAACAGCTTGG
AGAAAGACATTAAGAAAGAATTTAGTGGTGATGTTGAAGAAGGTATGGTTTCTGTATTAC
GTGCTGCAGTCAATCAACCGCTATTTTTTGCAAAACGCATTCATAAAGCTGTTGCCGGAT
TTGGTACTGACGATAGAGCATTAATTAGACTTTGCGTCACACGAAGTGAAATCGACATGA
TTGATATAAAAGAAGAATATCAAAAGAAATACGGTGAATCTTTGAGAGATGCAATTAAAG
GCGATACATCAGGTCATTACAAACATGCTCTCTATGTCTTAATTGGAGAAAACAAAAGTT
AA

>g12340.t28 Gene=g12340 Length=170
MKGFGTDEAAIINVLCRRPSHQRIEIAKAFKTAYGKDLIENIRKETSGNFERVLVALLTP
KIQYYCEELYEAMEGQGTDEDVLIEVLCGGLPNKEVQAITQEYQRLYGKTLENALKEETS
YSFKRLLVSLSTGNRDESTHVDLNSARNDAQALKDAGVNRFGTDESGLIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g12340.t28 Gene3D G3DSA:1.10.220.10 - 1 59 2.7E-22
14 g12340.t28 Gene3D G3DSA:1.10.220.10 - 60 136 8.1E-23
16 g12340.t28 Gene3D G3DSA:1.10.220.10 - 137 170 7.5E-6
3 g12340.t28 PANTHER PTHR10502 ANNEXIN 1 166 7.5E-57
4 g12340.t28 PANTHER PTHR10502:SF29 ANNEXIN A11 1 166 7.5E-57
11 g12340.t28 PRINTS PR00196 Annexin family signature 2 24 1.2E-27
8 g12340.t28 PRINTS PR00200 Annexin type IV signature 13 22 4.1E-5
6 g12340.t28 PRINTS PR00200 Annexin type IV signature 24 34 4.1E-5
10 g12340.t28 PRINTS PR00196 Annexin family signature 42 58 1.2E-27
7 g12340.t28 PRINTS PR00200 Annexin type IV signature 52 67 4.1E-5
12 g12340.t28 PRINTS PR00196 Annexin family signature 69 90 1.2E-27
5 g12340.t28 PRINTS PR00200 Annexin type IV signature 95 109 4.1E-5
9 g12340.t28 PRINTS PR00196 Annexin family signature 153 170 1.2E-27
2 g12340.t28 Pfam PF00191 Annexin 1 57 2.2E-20
1 g12340.t28 Pfam PF00191 Annexin 65 130 1.9E-17
17 g12340.t28 ProSitePatterns PS00223 Annexin repeat signature. 5 57 -
21 g12340.t28 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 24.948
22 g12340.t28 ProSiteProfiles PS51897 Annexin repeat profile. 60 132 21.099
20 g12340.t28 ProSiteProfiles PS51897 Annexin repeat profile. 144 170 9.706
18 g12340.t28 SMART SM00335 annex3 5 57 1.7E-21
19 g12340.t28 SMART SM00335 annex3 77 130 2.8E-14
13 g12340.t28 SUPERFAMILY SSF47874 Annexin 1 169 4.84E-56

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values