Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12340 g12340.t29 TSS g12340.t29 22642413 22642413
chr_1 g12340 g12340.t29 isoform g12340.t29 22643141 22644146
chr_1 g12340 g12340.t29 exon g12340.t29.exon1 22643141 22643308
chr_1 g12340 g12340.t29 cds g12340.t29.CDS1 22643296 22643308
chr_1 g12340 g12340.t29 exon g12340.t29.exon2 22643369 22643638
chr_1 g12340 g12340.t29 cds g12340.t29.CDS2 22643369 22643638
chr_1 g12340 g12340.t29 exon g12340.t29.exon3 22643700 22644038
chr_1 g12340 g12340.t29 cds g12340.t29.CDS3 22643700 22644038
chr_1 g12340 g12340.t29 exon g12340.t29.exon4 22644097 22644146
chr_1 g12340 g12340.t29 cds g12340.t29.CDS4 22644097 22644146
chr_1 g12340 g12340.t29 TTS g12340.t29 22644285 22644285

Sequences

>g12340.t29 Gene=g12340 Length=827
ATCAAAGAATTGAAATTGCAAAAGCATTTAAAACTGCATATGGCAAAGATTTAATTGAAA
ATATTCGTAAAGAAACATCAGGAAACTTTGAAAGAGTGTTGGTTGCACTCTTGACACCAA
AAATACAATATTATTGTGAAGAACTGTATGAAGCAATGGAAGGACAAGGCACTGATGAAG
ATGTTTTGATTGAAGTTCTGTGTGGTGGGTTGCCTAATAAAGAAGTGCAAGCAATTACTC
AAGAATATCAGAGACTTTATGGAAAAACATTGGAAAATGCTTTGAAAGAGGAAACAAGTT
ACAGTTTCAAAAGATTGTTGGTTTCTCTTTCAACTGGTAATCGAGATGAATCTACTCATG
TTGACTTAAATTCTGCACGAAATGATGCACAAGCTTTGAAGGATGCTGGTGTCAATCGAT
TTGGAACTGATGAATCAGAATTCAATAGGATTCTTTGCTTGAGAAATTTCCATCAAATTC
GGTTAGTTGCAGAAGAGTATGAGAAAATGACAGGAAACAGCTTGGAGAAAGACATTAAGA
AAGAATTTAGTGGTGATGTTGAAGAAGGTATGGTTTCTGTATTACGTGCTGCAGTCAATC
AACCGCTATTTTTTGCAAAACGCATTCATAAAGCTGTTGCCGGATTTGGTACTGACGATA
GAGCATTAATTAGACTTTGCGTCACACGAAGTGAAATCGACATGATTGATATAAAAGAAG
AATATCAAAAGAAATACGGTGAATCTTTGAGAGATGCAATTAAAGGCGATACATCAGGTC
ATTACAAACATGCTCTCTATGTCTTAATTGGAGAAAACAAAAGTTAA

>g12340.t29 Gene=g12340 Length=223
MEGQGTDEDVLIEVLCGGLPNKEVQAITQEYQRLYGKTLENALKEETSYSFKRLLVSLST
GNRDESTHVDLNSARNDAQALKDAGVNRFGTDESEFNRILCLRNFHQIRLVAEEYEKMTG
NSLEKDIKKEFSGDVEEGMVSVLRAAVNQPLFFAKRIHKAVAGFGTDDRALIRLCVTRSE
IDMIDIKEEYQKKYGESLRDAIKGDTSGHYKHALYVLIGENKS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g12340.t29 Gene3D G3DSA:1.10.220.10 - 1 64 0.000000
14 g12340.t29 Gene3D G3DSA:1.10.220.10 - 65 147 0.000000
13 g12340.t29 Gene3D G3DSA:1.10.220.10 - 150 220 0.000000
4 g12340.t29 PANTHER PTHR10502 ANNEXIN 1 219 0.000000
5 g12340.t29 PANTHER PTHR10502:SF226 ANNEXIN 1 219 0.000000
6 g12340.t29 PRINTS PR00196 Annexin family signature 87 109 0.000067
7 g12340.t29 PRINTS PR00196 Annexin family signature 157 178 0.000067
3 g12340.t29 Pfam PF00191 Annexin 1 58 0.000000
2 g12340.t29 Pfam PF00191 Annexin 77 141 0.000000
1 g12340.t29 Pfam PF00191 Annexin 152 216 0.000000
17 g12340.t29 ProSiteProfiles PS51897 Annexin repeat profile. 1 60 17.458000
16 g12340.t29 ProSiteProfiles PS51897 Annexin repeat profile. 72 144 26.504000
15 g12340.t29 ProSiteProfiles PS51897 Annexin repeat profile. 148 219 26.205000
10 g12340.t29 SMART SM00335 annex3 5 58 0.000000
11 g12340.t29 SMART SM00335 annex3 90 142 0.000000
9 g12340.t29 SMART SM00335 annex3 165 217 0.000000
8 g12340.t29 SUPERFAMILY SSF47874 Annexin 1 221 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values