Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12340 g12340.t8 TSS g12340.t8 22642413 22642413
chr_1 g12340 g12340.t8 isoform g12340.t8 22642537 22644146
chr_1 g12340 g12340.t8 exon g12340.t8.exon1 22642537 22642548
chr_1 g12340 g12340.t8 cds g12340.t8.CDS1 22642537 22642548
chr_1 g12340 g12340.t8 exon g12340.t8.exon2 22642632 22642883
chr_1 g12340 g12340.t8 cds g12340.t8.CDS2 22642632 22642883
chr_1 g12340 g12340.t8 exon g12340.t8.exon3 22642941 22643016
chr_1 g12340 g12340.t8 cds g12340.t8.CDS3 22642941 22643016
chr_1 g12340 g12340.t8 exon g12340.t8.exon4 22643087 22643308
chr_1 g12340 g12340.t8 cds g12340.t8.CDS4 22643087 22643308
chr_1 g12340 g12340.t8 exon g12340.t8.exon5 22643369 22643642
chr_1 g12340 g12340.t8 cds g12340.t8.CDS5 22643369 22643642
chr_1 g12340 g12340.t8 exon g12340.t8.exon6 22643710 22644038
chr_1 g12340 g12340.t8 cds g12340.t8.CDS6 22643710 22644038
chr_1 g12340 g12340.t8 exon g12340.t8.exon7 22644097 22644146
chr_1 g12340 g12340.t8 cds g12340.t8.CDS7 22644097 22644146
chr_1 g12340 g12340.t8 TTS g12340.t8 22644285 22644285

Sequences

>g12340.t8 Gene=g12340 Length=1215
ATGTACCCAAATTATCCAAATTCGAATCAACCTTATCCAAATATGCCACAATATCCAAAT
CAAATGCCTCCCTATCCGGATAATAATCAACAATATTTTCCACAAATGCCTGGAATGCCT
CAATATCAAATGCAGCCACAATATAATCCCATGCAACAGCAGTATCCTCCTCAAATGTCA
ACAGGACAATTTGATCAAAGTTATCAACAAGTTCATCATTATCAACAACAGCAGCAACCA
GCGATGAGTGTTCAACTAGCTCGGTCACGACCAACAGTCACACCAGCAGCTAATTTTGAC
GCAGCAAATGATGCCTCTATTTTACGGAAGGCTATGAAAGGTTTTGGAACAGATGAAGCA
GCAATCATAAATGTGTTATGTCGTCGACCATCACATCAAAGAATTGAAATTGCAAAAGCA
TTTAAAACTGCATATGGCAAAGATTTAATTGAAAATATTCGTAAAGAAACATCAGGAAAC
TTTGAAAGAGTGTTGGTTGCACTCTTGACACCAAAAATACAATATTATTGTGAAGAACTG
TATGAAGCAATGGAAGGACAAGGCACTGATGAAGATGTTTTGATTGAAGTTCTGTGTGGT
GGGTTGCCTAATAAAGAAGTGCAAGCAATTACTCAAGAATATCAGAGACTTTATGGAAAA
ACATTGGAAAATGCTTTGAAAGAGGAAACAAGTTACAGTTTCAAAAGATTGTTGGTTTCT
CTTTCAACTGGTAATCGAGATGAATCTACTCATGTTGACTTAAATTCTGCACGAAATGAT
GCACAAGCTTTGAAGGATGCTGGTGTCAATCGATTTGGAACTGATGAATCAGGTTTGATT
CTTTGCTTGAGAAATTTCCATCAAATTCGGTTAGTTGCAGAAGAGTATGAGAAAATGACA
GGAAACAGCTTGGAGAAAGACATTAAGAAAGAATTTAGTGGTGATGTTGAAGAAGGTATG
GTTTCTGTATTACGTGCTGCAGTCAATCAACCGCTATTTTTTGCAAAACGCATTCATAAA
GCTGTTGCCGGATTTGGTACTGACGATAGAGCATTAATTAGACTTTGCGTCACACGAAGT
GAAATCGACATGATTGATATAAAAGAAGAATATCAAAAGAAATACGGTGAATCTTTGAGA
GATGCAATTAAAGGCGATACATCAGGTCATTACAAACATGCTCTCTATGTCTTAATTGGA
GAAAACAAAAGTTAA

>g12340.t8 Gene=g12340 Length=404
MYPNYPNSNQPYPNMPQYPNQMPPYPDNNQQYFPQMPGMPQYQMQPQYNPMQQQYPPQMS
TGQFDQSYQQVHHYQQQQQPAMSVQLARSRPTVTPAANFDAANDASILRKAMKGFGTDEA
AIINVLCRRPSHQRIEIAKAFKTAYGKDLIENIRKETSGNFERVLVALLTPKIQYYCEEL
YEAMEGQGTDEDVLIEVLCGGLPNKEVQAITQEYQRLYGKTLENALKEETSYSFKRLLVS
LSTGNRDESTHVDLNSARNDAQALKDAGVNRFGTDESGLILCLRNFHQIRLVAEEYEKMT
GNSLEKDIKKEFSGDVEEGMVSVLRAAVNQPLFFAKRIHKAVAGFGTDDRALIRLCVTRS
EIDMIDIKEEYQKKYGESLRDAIKGDTSGHYKHALYVLIGENKS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g12340.t8 Gene3D G3DSA:1.10.220.10 - 98 170 1.3E-27
14 g12340.t8 Gene3D G3DSA:1.10.220.10 - 171 247 4.4E-22
16 g12340.t8 Gene3D G3DSA:1.10.220.10 - 248 327 6.9E-23
17 g12340.t8 Gene3D G3DSA:1.10.220.10 - 331 401 3.8E-26
23 g12340.t8 MobiDBLite mobidb-lite consensus disorder prediction 57 81 -
5 g12340.t8 PANTHER PTHR10502 ANNEXIN 8 402 1.2E-122
6 g12340.t8 PANTHER PTHR10502:SF29 ANNEXIN A11 8 402 1.2E-122
9 g12340.t8 PRINTS PR00196 Annexin family signature 113 135 5.6E-41
8 g12340.t8 PRINTS PR00196 Annexin family signature 153 169 5.6E-41
7 g12340.t8 PRINTS PR00196 Annexin family signature 180 201 5.6E-41
10 g12340.t8 PRINTS PR00196 Annexin family signature 264 290 5.6E-41
12 g12340.t8 PRINTS PR00196 Annexin family signature 342 362 5.6E-41
11 g12340.t8 PRINTS PR00196 Annexin family signature 370 385 5.6E-41
3 g12340.t8 Pfam PF00191 Annexin 104 168 3.7E-24
2 g12340.t8 Pfam PF00191 Annexin 176 241 9.2E-17
4 g12340.t8 Pfam PF00191 Annexin 260 322 6.5E-17
1 g12340.t8 Pfam PF00191 Annexin 333 397 2.0E-22
18 g12340.t8 ProSitePatterns PS00223 Annexin repeat signature. 116 168 -
25 g12340.t8 ProSiteProfiles PS51897 Annexin repeat profile. 99 170 29.027
27 g12340.t8 ProSiteProfiles PS51897 Annexin repeat profile. 171 243 21.099
26 g12340.t8 ProSiteProfiles PS51897 Annexin repeat profile. 255 325 18.332
24 g12340.t8 ProSiteProfiles PS51897 Annexin repeat profile. 329 400 26.205
20 g12340.t8 SMART SM00335 annex3 116 168 1.7E-21
22 g12340.t8 SMART SM00335 annex3 188 241 2.8E-14
19 g12340.t8 SMART SM00335 annex3 273 323 2.9E-13
21 g12340.t8 SMART SM00335 annex3 346 398 6.0E-22
13 g12340.t8 SUPERFAMILY SSF47874 Annexin 90 402 1.26E-110

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values