Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12342 g12342.t1 TSS g12342.t1 22645505 22645505
chr_1 g12342 g12342.t1 isoform g12342.t1 22645545 22646804
chr_1 g12342 g12342.t1 exon g12342.t1.exon1 22645545 22646691
chr_1 g12342 g12342.t1 cds g12342.t1.CDS1 22645545 22646691
chr_1 g12342 g12342.t1 exon g12342.t1.exon2 22646758 22646804
chr_1 g12342 g12342.t1 cds g12342.t1.CDS2 22646758 22646804
chr_1 g12342 g12342.t1 TTS g12342.t1 22646882 22646882

Sequences

>g12342.t1 Gene=g12342 Length=1194
ATGTATCCAAATCAAAATGTGAGTATGATAGGAAAAAAATATAAAAAATTCATTACTTTA
AAAAAAATAATTGAAAATTCAAATCAGCAGCCAGGATATGGGTATCCTCCTCCACAACAA
ATGCCAATGGCACAAATAGGTATGCCTTTGCAAATGCATCAACAGCAATTTCCTATGGGC
TTTATGCAACAACCAATGAGTTATCAACAAATGCCTGGCCAAATGAACATGCGAATGGCT
CAACAATTTTTTGTTAAAAAGACACGTCCAACTGTAAAACCAGTAGAAAATTTTGATGCT
TCAGCAGATGCTGCAATTTTACGTAAAGCAATGAAAGGAATTGGGACTGATGAAAAAGCT
TTGATTTCTGTAATTTGTTGTCGCCCAAACTATCAATTAATTGAAATTGCAAAAGCTTTC
AAGACATCGTACGGGAAAGATTTAATTGACAATGTTAAATCAGAAACATCTAATAATTTT
CAAAAAGTTTTAATTGCGTTAATTAAACCAAGATGGGAATTTATATGTGAAGAATTGCAG
AAAGGTGATGCTGAAGCACTTTATGAAATTATGTGCACATTGACAAATGAAGAAATACGT
CAGATTAAAAATGTCTTTCAAATGAAATATAAAAGCGATTTAGAAAGCACATTGAAGAAA
AGCACAAGTGGTTACATGAAACGACTTATGATTTCATTATCATCTGGAGGACGTGATGAA
TCCATGCACACAGACATTGAAAAAGCACGAACTGACGCACTTGCATTAAAAAAGGCTGGT
GTTGATAGGTTGGGAACAGATGAAGCAGAATTTATTCGTGTTCTCTGTTTGCGTAATTTT
GAACAATTAAAGCTTGTATGTCAAGAATATGAAAAATTGAGAGGAAAATCTTTAGAGAAA
GACATTAAAAGTGAATTTAGTGGAGATATCCAAGATTCTCTTCTTGCAATTGTTCGTTAT
GCAAATAATCAGTCTGCATTTTTTGCAAAATGTTTATACAAGTCTATGAAAGGCATCGGA
ACAAATGATAGTCGATTGATTCGGGTTTGCGTTTTGCGTGCTGAGATCGATATGATGGAC
ATTAAAGATGAGTTTTTAAAGATTGAAGGAAAAACATTGAAGAGTTTTATTGAAGGGGAT
ACATCTGGTGATTATAGAAGAGCTCTTTTGACTTTATGTGGTGAATTATATTAA

>g12342.t1 Gene=g12342 Length=397
MYPNQNVSMIGKKYKKFITLKKIIENSNQQPGYGYPPPQQMPMAQIGMPLQMHQQQFPMG
FMQQPMSYQQMPGQMNMRMAQQFFVKKTRPTVKPVENFDASADAAILRKAMKGIGTDEKA
LISVICCRPNYQLIEIAKAFKTSYGKDLIDNVKSETSNNFQKVLIALIKPRWEFICEELQ
KGDAEALYEIMCTLTNEEIRQIKNVFQMKYKSDLESTLKKSTSGYMKRLMISLSSGGRDE
SMHTDIEKARTDALALKKAGVDRLGTDEAEFIRVLCLRNFEQLKLVCQEYEKLRGKSLEK
DIKSEFSGDIQDSLLAIVRYANNQSAFFAKCLYKSMKGIGTNDSRLIRVCVLRAEIDMMD
IKDEFLKIEGKTLKSFIEGDTSGDYRRALLTLCGELY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g12342.t1 Gene3D G3DSA:1.10.220.10 - 89 168 2.5E-26
13 g12342.t1 Gene3D G3DSA:1.10.220.10 - 177 237 4.4E-14
15 g12342.t1 Gene3D G3DSA:1.10.220.10 - 238 323 6.7E-27
14 g12342.t1 Gene3D G3DSA:1.10.220.10 - 325 396 2.0E-24
5 g12342.t1 PANTHER PTHR10502 ANNEXIN 71 394 2.4E-111
6 g12342.t1 PANTHER PTHR10502:SF226 ANNEXIN 71 394 2.4E-111
7 g12342.t1 PRINTS PR00196 Annexin family signature 112 134 2.9E-36
10 g12342.t1 PRINTS PR00196 Annexin family signature 152 168 2.9E-36
9 g12342.t1 PRINTS PR00196 Annexin family signature 256 282 2.9E-36
8 g12342.t1 PRINTS PR00196 Annexin family signature 336 356 2.9E-36
11 g12342.t1 PRINTS PR00196 Annexin family signature 380 393 2.9E-36
3 g12342.t1 Pfam PF00191 Annexin 103 167 1.2E-23
4 g12342.t1 Pfam PF00191 Annexin 183 233 3.5E-12
2 g12342.t1 Pfam PF00191 Annexin 256 317 2.4E-20
1 g12342.t1 Pfam PF00191 Annexin 327 392 2.4E-18
17 g12342.t1 ProSitePatterns PS00223 Annexin repeat signature. 115 167 -
23 g12342.t1 ProSiteProfiles PS51897 Annexin repeat profile. 98 169 28.237
22 g12342.t1 ProSiteProfiles PS51897 Annexin repeat profile. 170 235 8.441
25 g12342.t1 ProSiteProfiles PS51897 Annexin repeat profile. 247 319 25.914
24 g12342.t1 ProSiteProfiles PS51897 Annexin repeat profile. 323 394 21.184
21 g12342.t1 SMART SM00335 annex3 115 167 2.5E-18
18 g12342.t1 SMART SM00335 annex3 181 233 8.6E-11
20 g12342.t1 SMART SM00335 annex3 265 317 1.4E-20
19 g12342.t1 SMART SM00335 annex3 340 392 7.3E-17
12 g12342.t1 SUPERFAMILY SSF47874 Annexin 63 394 1.57E-106

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values