Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12342 g12342.t4 TSS g12342.t4 22645505 22645505
chr_1 g12342 g12342.t4 isoform g12342.t4 22645545 22646804
chr_1 g12342 g12342.t4 exon g12342.t4.exon1 22645545 22645566
chr_1 g12342 g12342.t4 exon g12342.t4.exon2 22645617 22646691
chr_1 g12342 g12342.t4 cds g12342.t4.CDS1 22645665 22646691
chr_1 g12342 g12342.t4 exon g12342.t4.exon3 22646758 22646804
chr_1 g12342 g12342.t4 cds g12342.t4.CDS2 22646758 22646804
chr_1 g12342 g12342.t4 TTS g12342.t4 22646882 22646882

Sequences

>g12342.t4 Gene=g12342 Length=1144
ATGTATCCAAATCAAAATGTGAGAAAATTCAAATCAGCAGCCAGGATATGGGTATCCTCC
TCCACAACAAATGCCAATGGCACAAATAGGTATGCCTTTGCAAATGCATCAACAGCAATT
TCCTATGGGCTTTATGCAACAACCAATGAGTTATCAACAAATGCCTGGCCAAATGAACAT
GCGAATGGCTCAACAATTTTTTGTTAAAAAGACACGTCCAACTGTAAAACCAGTAGAAAA
TTTTGATGCTTCAGCAGATGCTGCAATTTTACGTAAAGCAATGAAAGGAATTGGGACTGA
TGAAAAAGCTTTGATTTCTGTAATTTGTTGTCGCCCAAACTATCAATTAATTGAAATTGC
AAAAGCTTTCAAGACATCGTACGGGAAAGATTTAATTGACAATGTTAAATCAGAAACATC
TAATAATTTTCAAAAAGTTTTAATTGCGTTAATTAAACCAAGATGGGAATTTATATGTGA
AGAATTGCAGAAAGGTGATGCTGAAGCACTTTATGAAATTATGTGCACATTGACAAATGA
AGAAATACGTCAGATTAAAAATGTCTTTCAAATGAAATATAAAAGCGATTTAGAAAGCAC
ATTGAAGAAAAGCACAAGTGGTTACATGAAACGACTTATGATTTCATTATCATCTGGAGG
ACGTGATGAATCCATGCACACAGACATTGAAAAAGCACGAACTGACGCACTTGCATTAAA
AAAGGCTGGTGTTGATAGGTTGGGAACAGATGAAGCAGAATTTATTCGTGTTCTCTGTTT
GCGTAATTTTGAACAATTAAAGCTTGTATGTCAAGAATATGAAAAATTGAGAGGAAAATC
TTTAGAGAAAGACATTAAAAGTGAATTTAGTGGAGATATCCAAGATTCTCTTCTTGCAAT
TGTTCGTTATGCAAATAATCAGTCTGCATTTTTTGCAAAATGTTTATACAAGTCTATGAA
AGGCATCGGAACAAATGATAGTCGATTGATTCGGGTTTGCGTTTTGCGTGCTGAGATCGA
TATGATGGACATTAAAGATGAGTTTTTAAAGATTGAAGGAAAAACATTGAAGAGTTTTAT
TGAAGGGGATACATCTGGTGATTATAGAAGAGCTCTTTTGACTTTATGTGGTGAATTATA
TTAA

>g12342.t4 Gene=g12342 Length=357
MPMAQIGMPLQMHQQQFPMGFMQQPMSYQQMPGQMNMRMAQQFFVKKTRPTVKPVENFDA
SADAAILRKAMKGIGTDEKALISVICCRPNYQLIEIAKAFKTSYGKDLIDNVKSETSNNF
QKVLIALIKPRWEFICEELQKGDAEALYEIMCTLTNEEIRQIKNVFQMKYKSDLESTLKK
STSGYMKRLMISLSSGGRDESMHTDIEKARTDALALKKAGVDRLGTDEAEFIRVLCLRNF
EQLKLVCQEYEKLRGKSLEKDIKSEFSGDIQDSLLAIVRYANNQSAFFAKCLYKSMKGIG
TNDSRLIRVCVLRAEIDMMDIKDEFLKIEGKTLKSFIEGDTSGDYRRALLTLCGELY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g12342.t4 Gene3D G3DSA:1.10.220.10 - 49 128 2.1E-26
16 g12342.t4 Gene3D G3DSA:1.10.220.10 - 137 197 3.8E-14
15 g12342.t4 Gene3D G3DSA:1.10.220.10 - 198 283 5.5E-27
14 g12342.t4 Gene3D G3DSA:1.10.220.10 - 285 356 1.7E-24
5 g12342.t4 PANTHER PTHR10502 ANNEXIN 42 354 5.7E-111
6 g12342.t4 PANTHER PTHR10502:SF226 ANNEXIN 42 354 5.7E-111
8 g12342.t4 PRINTS PR00196 Annexin family signature 72 94 1.9E-36
7 g12342.t4 PRINTS PR00196 Annexin family signature 112 128 1.9E-36
9 g12342.t4 PRINTS PR00196 Annexin family signature 216 242 1.9E-36
10 g12342.t4 PRINTS PR00196 Annexin family signature 296 316 1.9E-36
11 g12342.t4 PRINTS PR00196 Annexin family signature 340 353 1.9E-36
2 g12342.t4 Pfam PF00191 Annexin 63 127 9.9E-24
1 g12342.t4 Pfam PF00191 Annexin 143 193 3.0E-12
4 g12342.t4 Pfam PF00191 Annexin 216 277 2.1E-20
3 g12342.t4 Pfam PF00191 Annexin 287 352 2.0E-18
17 g12342.t4 ProSitePatterns PS00223 Annexin repeat signature. 75 127 -
22 g12342.t4 ProSiteProfiles PS51897 Annexin repeat profile. 58 129 28.237
24 g12342.t4 ProSiteProfiles PS51897 Annexin repeat profile. 130 195 8.441
25 g12342.t4 ProSiteProfiles PS51897 Annexin repeat profile. 207 279 25.914
23 g12342.t4 ProSiteProfiles PS51897 Annexin repeat profile. 283 354 21.184
20 g12342.t4 SMART SM00335 annex3 75 127 2.5E-18
19 g12342.t4 SMART SM00335 annex3 141 193 8.6E-11
18 g12342.t4 SMART SM00335 annex3 225 277 1.4E-20
21 g12342.t4 SMART SM00335 annex3 300 352 7.3E-17
12 g12342.t4 SUPERFAMILY SSF47874 Annexin 23 354 1.05E-106

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values