Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12342 g12342.t5 TSS g12342.t5 22645631 22645631
chr_1 g12342 g12342.t5 isoform g12342.t5 22645867 22646688
chr_1 g12342 g12342.t5 exon g12342.t5.exon1 22645867 22646688
chr_1 g12342 g12342.t5 cds g12342.t5.CDS1 22645875 22646687
chr_1 g12342 g12342.t5 TTS g12342.t5 22646882 22646882

Sequences

>g12342.t5 Gene=g12342 Length=822
GTAAAGCAATGAAAGGAATTGGGACTGATGAAAAAGCTTTGATTTCTGTAATTTGTTGTC
GCCCAAACTATCAATTAATTGAAATTGCAAAAGCTTTCAAGACATCGTACGGGAAAGATT
TAATTGACAATGTTAAATCAGAAACATCTAATAATTTTCAAAAAGTTTTAATTGCGTTAA
TTAAACCAAGATGGGAATTTATATGTGAAGAATTGCAGAAAGGTGATGCTGAAGCACTTT
ATGAAATTATGTGCACATTGACAAATGAAGAAATACGTCAGATTAAAAATGTCTTTCAAA
TGAAATATAAAAGCGATTTAGAAAGCACATTGAAGAAAAGCACAAGTGGTTACATGAAAC
GACTTATGATTTCATTATCATCTGGAGGACGTGATGAATCCATGCACACAGACATTGAAA
AAGCACGAACTGACGCACTTGCATTAAAAAAGGCTGGTGTTGATAGGTTGGGAACAGATG
AAGCAGAATTTATTCGTGTTCTCTGTTTGCGTAATTTTGAACAATTAAAGCTTGTATGTC
AAGAATATGAAAAATTGAGAGGAAAATCTTTAGAGAAAGACATTAAAAGTGAATTTAGTG
GAGATATCCAAGATTCTCTTCTTGCAATTGTTCGTTATGCAAATAATCAGTCTGCATTTT
TTGCAAAATGTTTATACAAGTCTATGAAAGGCATCGGAACAAATGATAGTCGATTGATTC
GGGTTTGCGTTTTGCGTGCTGAGATCGATATGATGGACATTAAAGATGAGTTTTTAAAGA
TTGAAGGAAAAACATTGAAGAGTTTTATTGAAGGGGATACAT

>g12342.t5 Gene=g12342 Length=271
MKGIGTDEKALISVICCRPNYQLIEIAKAFKTSYGKDLIDNVKSETSNNFQKVLIALIKP
RWEFICEELQKGDAEALYEIMCTLTNEEIRQIKNVFQMKYKSDLESTLKKSTSGYMKRLM
ISLSSGGRDESMHTDIEKARTDALALKKAGVDRLGTDEAEFIRVLCLRNFEQLKLVCQEY
EKLRGKSLEKDIKSEFSGDIQDSLLAIVRYANNQSAFFAKCLYKSMKGIGTNDSRLIRVC
VLRAEIDMMDIKDEFLKIEGKTLKSFIEGDT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g12342.t5 Gene3D G3DSA:1.10.220.10 - 1 59 6.0E-20
15 g12342.t5 Gene3D G3DSA:1.10.220.10 - 66 127 2.2E-14
16 g12342.t5 Gene3D G3DSA:1.10.220.10 - 128 213 3.3E-27
14 g12342.t5 Gene3D G3DSA:1.10.220.10 - 215 271 4.0E-16
5 g12342.t5 PANTHER PTHR10502 ANNEXIN 1 271 6.1E-92
6 g12342.t5 PANTHER PTHR10502:SF226 ANNEXIN 1 271 6.1E-92
11 g12342.t5 PRINTS PR00196 Annexin family signature 2 24 7.8E-33
9 g12342.t5 PRINTS PR00196 Annexin family signature 42 58 7.8E-33
10 g12342.t5 PRINTS PR00196 Annexin family signature 146 172 7.8E-33
8 g12342.t5 PRINTS PR00196 Annexin family signature 226 246 7.8E-33
7 g12342.t5 PRINTS PR00196 Annexin family signature 254 269 7.8E-33
4 g12342.t5 Pfam PF00191 Annexin 1 57 3.8E-19
1 g12342.t5 Pfam PF00191 Annexin 73 123 1.9E-12
3 g12342.t5 Pfam PF00191 Annexin 146 207 1.3E-20
2 g12342.t5 Pfam PF00191 Annexin 217 271 3.3E-12
17 g12342.t5 ProSitePatterns PS00223 Annexin repeat signature. 5 57 -
23 g12342.t5 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 23.231
24 g12342.t5 ProSiteProfiles PS51897 Annexin repeat profile. 60 125 8.441
25 g12342.t5 ProSiteProfiles PS51897 Annexin repeat profile. 137 209 25.914
22 g12342.t5 ProSiteProfiles PS51897 Annexin repeat profile. 213 271 15.318
20 g12342.t5 SMART SM00335 annex3 5 57 2.5E-18
21 g12342.t5 SMART SM00335 annex3 71 123 8.6E-11
18 g12342.t5 SMART SM00335 annex3 155 207 1.4E-20
19 g12342.t5 SMART SM00335 annex3 230 271 0.01
12 g12342.t5 SUPERFAMILY SSF47874 Annexin 1 271 1.31E-88

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values