Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12343 g12343.t1 TSS g12343.t1 22647505 22647505
chr_1 g12343 g12343.t1 isoform g12343.t1 22647634 22649590
chr_1 g12343 g12343.t1 exon g12343.t1.exon1 22647634 22647645
chr_1 g12343 g12343.t1 cds g12343.t1.CDS1 22647634 22647645
chr_1 g12343 g12343.t1 exon g12343.t1.exon2 22647820 22648284
chr_1 g12343 g12343.t1 cds g12343.t1.CDS2 22647820 22648284
chr_1 g12343 g12343.t1 exon g12343.t1.exon3 22648513 22648588
chr_1 g12343 g12343.t1 cds g12343.t1.CDS3 22648513 22648588
chr_1 g12343 g12343.t1 exon g12343.t1.exon4 22648649 22649476
chr_1 g12343 g12343.t1 cds g12343.t1.CDS4 22648649 22649476
chr_1 g12343 g12343.t1 exon g12343.t1.exon5 22649541 22649590
chr_1 g12343 g12343.t1 cds g12343.t1.CDS5 22649541 22649590
chr_1 g12343 g12343.t1 TTS g12343.t1 22650062 22650062

Sequences

>g12343.t1 Gene=g12343 Length=1431
ATGTATCCAAATCAACAATCTGGTTACAATCAGTATAATCCACCATTTGGTGCAAATCCA
AGCATGCCAATGCCTCAATATCCTAATCAGATGCCTCAACCTTTTGGAGCTGGTTATTCT
CAAATGCCTGGAATGCCGATGCCACAACAAAATAATCCAAGCCCTTATGGCGGATTTCAA
GGTCAAATGAATTATCAAAATCAAATGCCATCAATGAATCAGCAAATGCCTTATCAACCT
CATCAACAAAACTTTGATTCATACAATCAGCAGCAGAATTCTTACCAACAACCTTATGCT
CCACCTAGCGTTTATCCAAATTTGCCGACTTCAGCTACCAGTCCTATTTATCAACATCAA
CAAAGTAATGCTTCTTCTTATGGAACTCCAAATCAACATCAATACCAATCACCTCAATTT
CAAATATCACAAAGTACACCAATGTATGGAAGTCAACAAACAGGACAAATTAAAAAGGGA
CGTCCAACAGTTACACCAGCATCGAATTTCAATGCTTCTAATGATTGTGCTATTTTACGA
AAAGCTATGAAAGGATTTGGAACTGATGAAGATGCTATCATTTCTGTATTATGTCATCGA
ACTGTTGATCAAAGAATGGAAATTGTTCGTACTTATAAGACAGCTTATGGCAAAGATCTG
CTTAATGATATTCGCTCTGAAACATCAGGAAATTTTGAAAAGATCTTGATTGCACTACTT
ACACCAACAACTGAATTATATTGTCGTGAACTTTATGAAGCAATGGCTGGTGCGGGAACT
GATGAGGATGTACTCATTGAAGTTATGTGCACAATGTCAAATTATGAAATTCGTCAAATT
TGTGCTCAGTATGTACGTATGTATGGACAACCATTAGAACATCAATTACGAAGTGATACA
AGCGGACATATGAAAAGACTTATGACATCTCTATCAGTTGGAGGACGTGATGAATCTATG
CACACTGATGTTAATCAAGCACGCGCTGATGCAGAAACATTGAGAGCTGCAGGAGTTGGA
CGATGGGGAACTGATGAAAGTGAATTCAATCGCATTCTCTGTTTGCGAAATTATGAACAA
ATTAAACTCATATGCCAAGAATATGAAAAAATTACTGGAAGTTCTTTGGAAAAAGACATT
AAAAAAGAATTTAGTGGTGATATCGAGGATGCTCTTCTTGCCATTATTCGTGTTGCTAAA
AATCGTCCAGAATTCTTTGCTCGTCGTTTGCACAAATCGATGGCTGGTTTAGGCACTGAT
GATAAATCTTTAATTCGTTTGGTTGTCACACGATCTGAAATTGACATGATGGATATAAAA
GACGAATTTCAACGTTATTATGGAAAGACACTCAAATCATTTATTAAAGGGGACACAAGT
GGTCATTACAAGCATGCTCTTTATGCTCTTTGTGGCGAAAGTCGAAGTTAA

>g12343.t1 Gene=g12343 Length=476
MYPNQQSGYNQYNPPFGANPSMPMPQYPNQMPQPFGAGYSQMPGMPMPQQNNPSPYGGFQ
GQMNYQNQMPSMNQQMPYQPHQQNFDSYNQQQNSYQQPYAPPSVYPNLPTSATSPIYQHQ
QSNASSYGTPNQHQYQSPQFQISQSTPMYGSQQTGQIKKGRPTVTPASNFNASNDCAILR
KAMKGFGTDEDAIISVLCHRTVDQRMEIVRTYKTAYGKDLLNDIRSETSGNFEKILIALL
TPTTELYCRELYEAMAGAGTDEDVLIEVMCTMSNYEIRQICAQYVRMYGQPLEHQLRSDT
SGHMKRLMTSLSVGGRDESMHTDVNQARADAETLRAAGVGRWGTDESEFNRILCLRNYEQ
IKLICQEYEKITGSSLEKDIKKEFSGDIEDALLAIIRVAKNRPEFFARRLHKSMAGLGTD
DKSLIRLVVTRSEIDMMDIKDEFQRYYGKTLKSFIKGDTSGHYKHALYALCGESRS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g12343.t1 Gene3D G3DSA:1.10.220.10 - 169 241 1.1E-28
17 g12343.t1 Gene3D G3DSA:1.10.220.10 - 242 313 2.0E-22
15 g12343.t1 Gene3D G3DSA:1.10.220.10 - 314 401 2.1E-30
14 g12343.t1 Gene3D G3DSA:1.10.220.10 - 403 474 5.1E-27
24 g12343.t1 MobiDBLite mobidb-lite consensus disorder prediction 117 138 -
5 g12343.t1 PANTHER PTHR10502 ANNEXIN 109 472 2.0E-135
6 g12343.t1 PANTHER PTHR10502:SF226 ANNEXIN 109 472 2.0E-135
8 g12343.t1 PRINTS PR00196 Annexin family signature 184 206 2.4E-50
12 g12343.t1 PRINTS PR00196 Annexin family signature 224 240 2.4E-50
10 g12343.t1 PRINTS PR00196 Annexin family signature 251 272 2.4E-50
9 g12343.t1 PRINTS PR00196 Annexin family signature 334 360 2.4E-50
11 g12343.t1 PRINTS PR00196 Annexin family signature 414 434 2.4E-50
7 g12343.t1 PRINTS PR00196 Annexin family signature 458 471 2.4E-50
2 g12343.t1 Pfam PF00191 Annexin 175 239 4.0E-25
4 g12343.t1 Pfam PF00191 Annexin 249 311 1.6E-20
1 g12343.t1 Pfam PF00191 Annexin 330 395 5.4E-23
3 g12343.t1 Pfam PF00191 Annexin 405 470 3.0E-22
18 g12343.t1 ProSitePatterns PS00223 Annexin repeat signature. 187 239 -
19 g12343.t1 ProSitePatterns PS00223 Annexin repeat signature. 418 470 -
25 g12343.t1 ProSiteProfiles PS51897 Annexin repeat profile. 170 241 29.924
28 g12343.t1 ProSiteProfiles PS51897 Annexin repeat profile. 242 313 24.503
27 g12343.t1 ProSiteProfiles PS51897 Annexin repeat profile. 325 397 30.231
26 g12343.t1 ProSiteProfiles PS51897 Annexin repeat profile. 401 472 28.889
20 g12343.t1 SMART SM00335 annex3 187 239 1.2E-24
21 g12343.t1 SMART SM00335 annex3 259 311 7.4E-18
22 g12343.t1 SMART SM00335 annex3 343 395 3.8E-22
23 g12343.t1 SMART SM00335 annex3 418 470 3.9E-22
13 g12343.t1 SUPERFAMILY SSF47874 Annexin 133 472 1.19E-121

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values