General information for g12343.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12343 is located on chr_1: 22649445..22650065 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12343 | g12343.t11 | TSS | g12343.t11 | 22647505 | 22647505 |
| chr_1 | g12343 | g12343.t11 | isoform | g12343.t11 | 22647820 | 22648933 |
| chr_1 | g12343 | g12343.t11 | exon | g12343.t11.exon1 | 22647820 | 22648288 |
| chr_1 | g12343 | g12343.t11 | cds | g12343.t11.CDS1 | 22647871 | 22648288 |
| chr_1 | g12343 | g12343.t11 | exon | g12343.t11.exon2 | 22648513 | 22648588 |
| chr_1 | g12343 | g12343.t11 | cds | g12343.t11.CDS2 | 22648513 | 22648556 |
| chr_1 | g12343 | g12343.t11 | exon | g12343.t11.exon3 | 22648649 | 22648933 |
| chr_1 | g12343 | g12343.t11 | TTS | g12343.t11 | NA | NA |
Sequences
>g12343.t11 Gene=g12343 Length=830
CAACAATCTGGTTACAATCAGTATAATCCACCATTTGGTGCAAATCCAAGCATGCCAATG
CCTCAATATCCTAATCAGATGCCTCAACCTTTTGGAGCTGGTTATTCTCAAATGCCTGGA
ATGCCGATGCCACAACAAAATAATCCAAGCCCTTATGGCGGATTTCAAGGTCAAATGAAT
TATCAAAATCAAATGCCATCAATGAATCAGCAAATGCCTTATCAACCTCATCAACAAAAC
TTTGATTCATACAATCAGCAGCAGAATTCTTACCAACAACCTTATGCTCCACCTAGCGTT
TATCCAAATTTGCCGACTTCAGCTACCAGTCCTATTTATCAACATCAACAAAGTAATGCT
TCTTCTTATGGAACTCCAAATCAACATCAATACCAATCACCTCAATTTCAAATATCACAA
AGTACACCAATGTATGGAAGTCAACAAACAGGACAAATTAAAAAGGTTAGGACGTCCAAC
AGTTACACCAGCATCGAATTTCAATGCTTCTAATGATTGTGCTATTTTACGAAAAGCTAT
GAAAGGATTTGGAACTGATGAAGATGCTATCATTTCTGTATTATGTCATCGAACTGTTGA
TCAAAGAATGGAAATTGTTCGTACTTATAAGACAGCTTATGGCAAAGATCTGCTTAATGA
TATTCGCTCTGAAACATCAGGAAATTTTGAAAAGATCTTGATTGCACTACTTACACCAAC
AACTGAATTATATTGTCGTGAACTTTATGAAGCAATGGCTGGTGCGGGAACTGATGAGGA
TGTACTCATTGAAGTTATGTGCACAATGTCAAATTATGAAATTCGTCAAA
>g12343.t11 Gene=g12343 Length=153
MPMPQYPNQMPQPFGAGYSQMPGMPMPQQNNPSPYGGFQGQMNYQNQMPSMNQQMPYQPH
QQNFDSYNQQQNSYQQPYAPPSVYPNLPTSATSPIYQHQQSNASSYGTPNQHQYQSPQFQ
ISQSTPMYGSQQTGQIKKVRTSNSYTSIEFQCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g12343.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 117 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed