Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12343 g12343.t13 TSS g12343.t13 22647505 22647505
chr_1 g12343 g12343.t13 isoform g12343.t13 22648194 22649928
chr_1 g12343 g12343.t13 exon g12343.t13.exon1 22648194 22648284
chr_1 g12343 g12343.t13 cds g12343.t13.CDS1 22648249 22648284
chr_1 g12343 g12343.t13 exon g12343.t13.exon2 22648513 22648588
chr_1 g12343 g12343.t13 cds g12343.t13.CDS2 22648513 22648588
chr_1 g12343 g12343.t13 exon g12343.t13.exon3 22648649 22649476
chr_1 g12343 g12343.t13 cds g12343.t13.CDS3 22648649 22649476
chr_1 g12343 g12343.t13 exon g12343.t13.exon4 22649541 22649928
chr_1 g12343 g12343.t13 cds g12343.t13.CDS4 22649541 22649590
chr_1 g12343 g12343.t13 TTS g12343.t13 22650062 22650062

Sequences

>g12343.t13 Gene=g12343 Length=1383
TCCAAATCAACATCAATACCAATCACCTCAATTTCAAATATCACAAAGTACACCAATGTA
TGGAAGTCAACAAACAGGACAAATTAAAAAGGGACGTCCAACAGTTACACCAGCATCGAA
TTTCAATGCTTCTAATGATTGTGCTATTTTACGAAAAGCTATGAAAGGATTTGGAACTGA
TGAAGATGCTATCATTTCTGTATTATGTCATCGAACTGTTGATCAAAGAATGGAAATTGT
TCGTACTTATAAGACAGCTTATGGCAAAGATCTGCTTAATGATATTCGCTCTGAAACATC
AGGAAATTTTGAAAAGATCTTGATTGCACTACTTACACCAACAACTGAATTATATTGTCG
TGAACTTTATGAAGCAATGGCTGGTGCGGGAACTGATGAGGATGTACTCATTGAAGTTAT
GTGCACAATGTCAAATTATGAAATTCGTCAAATTTGTGCTCAGTATGTACGTATGTATGG
ACAACCATTAGAACATCAATTACGAAGTGATACAAGCGGACATATGAAAAGACTTATGAC
ATCTCTATCAGTTGGAGGACGTGATGAATCTATGCACACTGATGTTAATCAAGCACGCGC
TGATGCAGAAACATTGAGAGCTGCAGGAGTTGGACGATGGGGAACTGATGAAAGTGAATT
CAATCGCATTCTCTGTTTGCGAAATTATGAACAAATTAAACTCATATGCCAAGAATATGA
AAAAATTACTGGAAGTTCTTTGGAAAAAGACATTAAAAAAGAATTTAGTGGTGATATCGA
GGATGCTCTTCTTGCCATTATTCGTGTTGCTAAAAATCGTCCAGAATTCTTTGCTCGTCG
TTTGCACAAATCGATGGCTGGTTTAGGCACTGATGATAAATCTTTAATTCGTTTGGTTGT
CACACGATCTGAAATTGACATGATGGATATAAAAGACGAATTTCAACGTTATTATGGAAA
GACACTCAAATCATTTATTAAAGGGGACACAAGTGGTCATTACAAGCATGCTCTTTATGC
TCTTTGTGGCGAAAGTCGAAGTTAAATTATAAAAAATAATATCAAAATCCAAAACCGTTT
TTCGATTAACTAAAGTTTACTCAAATGGACTCAAATAAAGTTAGTTGAGTTTTAATTGAA
GAAAATTTTAATTAAATTTAGGTAAGTTCCAACTTAAATTTAAAACGGTTTTGGATTCTG
AAAATTATTAATATTAAAGTCCGAAACTGTTTAATATTTTAGTCGCGAATAACTAAAATT
CAACTAAATCTAGTTGATTAAATTTAATGTTTTAATCCGCTTGTGATTCTCTACTTACTA
AGTTGAATTTTAGTTATTCATAAAACGGTTTAAGACTTTGATTAATATCATATTTTTCTT
ACA

>g12343.t13 Gene=g12343 Length=329
MYGSQQTGQIKKGRPTVTPASNFNASNDCAILRKAMKGFGTDEDAIISVLCHRTVDQRME
IVRTYKTAYGKDLLNDIRSETSGNFEKILIALLTPTTELYCRELYEAMAGAGTDEDVLIE
VMCTMSNYEIRQICAQYVRMYGQPLEHQLRSDTSGHMKRLMTSLSVGGRDESMHTDVNQA
RADAETLRAAGVGRWGTDESEFNRILCLRNYEQIKLICQEYEKITGSSLEKDIKKEFSGD
IEDALLAIIRVAKNRPEFFARRLHKSMAGLGTDDKSLIRLVVTRSEIDMMDIKDEFQRYY
GKTLKSFIKGDTSGHYKHALYALCGESRS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g12343.t13 Gene3D G3DSA:1.10.220.10 - 22 94 5.8E-29
16 g12343.t13 Gene3D G3DSA:1.10.220.10 - 95 166 1.1E-22
14 g12343.t13 Gene3D G3DSA:1.10.220.10 - 167 254 1.1E-30
15 g12343.t13 Gene3D G3DSA:1.10.220.10 - 256 327 2.8E-27
5 g12343.t13 PANTHER PTHR10502 ANNEXIN 13 325 5.7E-134
6 g12343.t13 PANTHER PTHR10502:SF226 ANNEXIN 13 325 5.7E-134
10 g12343.t13 PRINTS PR00196 Annexin family signature 37 59 3.7E-51
7 g12343.t13 PRINTS PR00196 Annexin family signature 77 93 3.7E-51
8 g12343.t13 PRINTS PR00196 Annexin family signature 104 125 3.7E-51
9 g12343.t13 PRINTS PR00196 Annexin family signature 187 213 3.7E-51
12 g12343.t13 PRINTS PR00196 Annexin family signature 267 287 3.7E-51
11 g12343.t13 PRINTS PR00196 Annexin family signature 311 324 3.7E-51
3 g12343.t13 Pfam PF00191 Annexin 28 92 2.3E-25
2 g12343.t13 Pfam PF00191 Annexin 102 164 9.3E-21
4 g12343.t13 Pfam PF00191 Annexin 183 248 3.0E-23
1 g12343.t13 Pfam PF00191 Annexin 258 323 1.7E-22
18 g12343.t13 ProSitePatterns PS00223 Annexin repeat signature. 40 92 -
19 g12343.t13 ProSitePatterns PS00223 Annexin repeat signature. 271 323 -
24 g12343.t13 ProSiteProfiles PS51897 Annexin repeat profile. 23 94 29.924
25 g12343.t13 ProSiteProfiles PS51897 Annexin repeat profile. 95 166 24.503
27 g12343.t13 ProSiteProfiles PS51897 Annexin repeat profile. 178 250 30.231
26 g12343.t13 ProSiteProfiles PS51897 Annexin repeat profile. 254 325 28.889
20 g12343.t13 SMART SM00335 annex3 40 92 1.2E-24
21 g12343.t13 SMART SM00335 annex3 112 164 7.4E-18
22 g12343.t13 SMART SM00335 annex3 196 248 3.8E-22
23 g12343.t13 SMART SM00335 annex3 271 323 3.9E-22
13 g12343.t13 SUPERFAMILY SSF47874 Annexin 8 325 6.41E-121

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values