Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12343 g12343.t14 isoform g12343.t14 22648933 22650065
chr_1 g12343 g12343.t14 exon g12343.t14.exon1 22648933 22649476
chr_1 g12343 g12343.t14 cds g12343.t14.CDS1 22648954 22649476
chr_1 g12343 g12343.t14 exon g12343.t14.exon2 22649541 22650065
chr_1 g12343 g12343.t14 cds g12343.t14.CDS2 22649541 22649590
chr_1 g12343 g12343.t14 TTS g12343.t14 22650062 22650062
chr_1 g12343 g12343.t14 TSS g12343.t14 NA NA

Sequences

>g12343.t14 Gene=g12343 Length=1069
ATTTGTGCTCAGTATGTACGTATGTATGGACAACCATTAGAACATCAATTACGAAGTGAT
ACAAGCGGACATATGAAAAGACTTATGACATCTCTATCAGTTGGAGGACGTGATGAATCT
ATGCACACTGATGTTAATCAAGCACGCGCTGATGCAGAAACATTGAGAGCTGCAGGAGTT
GGACGATGGGGAACTGATGAAAGTGAATTCAATCGCATTCTCTGTTTGCGAAATTATGAA
CAAATTAAACTCATATGCCAAGAATATGAAAAAATTACTGGAAGTTCTTTGGAAAAAGAC
ATTAAAAAAGAATTTAGTGGTGATATCGAGGATGCTCTTCTTGCCATTATTCGTGTTGCT
AAAAATCGTCCAGAATTCTTTGCTCGTCGTTTGCACAAATCGATGGCTGGTTTAGGCACT
GATGATAAATCTTTAATTCGTTTGGTTGTCACACGATCTGAAATTGACATGATGGATATA
AAAGACGAATTTCAACGTTATTATGGAAAGACACTCAAATCATTTATTAAAGGGGACACA
AGTGGTCATTACAAGCATGCTCTTTATGCTCTTTGTGGCGAAAGTCGAAGTTAAATTATA
AAAAATAATATCAAAATCCAAAACCGTTTTTCGATTAACTAAAGTTTACTCAAATGGACT
CAAATAAAGTTAGTTGAGTTTTAATTGAAGAAAATTTTAATTAAATTTAGGTAAGTTCCA
ACTTAAATTTAAAACGGTTTTGGATTCTGAAAATTATTAATATTAAAGTCCGAAACTGTT
TAATATTTTAGTCGCGAATAACTAAAATTCAACTAAATCTAGTTGATTAAATTTAATGTT
TTAATCCGCTTGTGATTCTCTACTTACTAAGTTGAATTTTAGTTATTCATAAAACGGTTT
AAGACTTTGATTAATATCATATTTTTCTTACAAACCTTTTAGCAACTAATGTCAATAATG
TAACTATTTTTAAATTTCTTAATTCTATTTTATAAACTAAATATGCTAACATTTATATTC
ATTGTTATCTCTCTCAAAAAAAATTTAATAAAAAGTTTTTATTATTGTT

>g12343.t14 Gene=g12343 Length=190
MYGQPLEHQLRSDTSGHMKRLMTSLSVGGRDESMHTDVNQARADAETLRAAGVGRWGTDE
SEFNRILCLRNYEQIKLICQEYEKITGSSLEKDIKKEFSGDIEDALLAIIRVAKNRPEFF
ARRLHKSMAGLGTDDKSLIRLVVTRSEIDMMDIKDEFQRYYGKTLKSFIKGDTSGHYKHA
LYALCGESRS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g12343.t14 Gene3D G3DSA:1.10.220.10 - 27 115 3.4E-31
8 g12343.t14 Gene3D G3DSA:1.10.220.10 - 117 188 9.9E-28
3 g12343.t14 PANTHER PTHR10502 ANNEXIN 2 186 1.2E-78
4 g12343.t14 PANTHER PTHR10502:SF226 ANNEXIN 2 186 1.2E-78
5 g12343.t14 PRINTS PR00196 Annexin family signature 54 76 3.2E-6
6 g12343.t14 PRINTS PR00196 Annexin family signature 124 145 3.2E-6
1 g12343.t14 Pfam PF00191 Annexin 44 109 1.1E-23
2 g12343.t14 Pfam PF00191 Annexin 119 184 6.1E-23
10 g12343.t14 ProSitePatterns PS00223 Annexin repeat signature. 132 184 -
14 g12343.t14 ProSiteProfiles PS51897 Annexin repeat profile. 1 27 9.637
13 g12343.t14 ProSiteProfiles PS51897 Annexin repeat profile. 39 111 30.231
15 g12343.t14 ProSiteProfiles PS51897 Annexin repeat profile. 115 186 28.889
12 g12343.t14 SMART SM00335 annex3 57 109 3.8E-22
11 g12343.t14 SMART SM00335 annex3 132 184 3.9E-22
7 g12343.t14 SUPERFAMILY SSF47874 Annexin 1 187 2.09E-67

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values