General information for g12343.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12343 is located on chr_1: 22649445..22650065 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12343 | g12343.t2 | isoform | g12343.t2 | 22647225 | 22648284 |
| chr_1 | g12343 | g12343.t2 | exon | g12343.t2.exon1 | 22647225 | 22648284 |
| chr_1 | g12343 | g12343.t2 | cds | g12343.t2.CDS1 | 22647871 | 22648284 |
| chr_1 | g12343 | g12343.t2 | TSS | g12343.t2 | NA | NA |
| chr_1 | g12343 | g12343.t2 | TTS | g12343.t2 | NA | NA |
Sequences
>g12343.t2 Gene=g12343 Length=1060
TGACAAATAAAGTTTCACCATGAAATAACTGTGAAAAAGCTCTTTTTATTGTTTTCTGGT
CAAATTTGGTGCCTTAAGAACTTAAGTTCTTTGATTAAAAGAATCGAAATTTCAATACAT
TTAACAATTTCATAATAAAAGAATTAACAAAAATAAGTGTTAATTAAATTAAATTAAGCA
GAAATATTATCGTATTTATGTATATAACAGTTTATTTCGTCATTTATTTCAATGTATTGT
GTTTATTGAGAGAAAAGTTTGAGTATTTTTTTTCTGAGCTCAGTTCTCTTTCTACATTTT
GTCGAACAACACAAAAATCAAGTAATTTTGTGAAATTATCAATATAATCAGAAAATTATC
AGTTTTAGTGGCTATTTAGGCACAATACTTTTATTAAACAGCTTTTATAATGTATCCAAA
TGTAAGTAATAGTATTTTATTTGGAATTTTTCATGAAAAAACAAAATTTTAGTTTTTGCA
ATACTTTCATTTACATTTCATTGAAAATCAGTTTGAATTTAATACTGAGAAACAATTGAA
ATGTAATATACTTCAATATTGGTTGATTTTCTTTATATATTTCTTTAAAATTCAGCAACA
ATCTGGTTACAATCAGTATAATCCACCATTTGGTGCAAATCCAAGCATGCCAATGCCTCA
ATATCCTAATCAGATGCCTCAACCTTTTGGAGCTGGTTATTCTCAAATGCCTGGAATGCC
GATGCCACAACAAAATAATCCAAGCCCTTATGGCGGATTTCAAGGTCAAATGAATTATCA
AAATCAAATGCCATCAATGAATCAGCAAATGCCTTATCAACCTCATCAACAAAACTTTGA
TTCATACAATCAGCAGCAGAATTCTTACCAACAACCTTATGCTCCACCTAGCGTTTATCC
AAATTTGCCGACTTCAGCTACCAGTCCTATTTATCAACATCAACAAAGTAATGCTTCTTC
TTATGGAACTCCAAATCAACATCAATACCAATCACCTCAATTTCAAATATCACAAAGTAC
ACCAATGTATGGAAGTCAACAAACAGGACAAATTAAAAAG
>g12343.t2 Gene=g12343 Length=138
MPMPQYPNQMPQPFGAGYSQMPGMPMPQQNNPSPYGGFQGQMNYQNQMPSMNQQMPYQPH
QQNFDSYNQQQNSYQQPYAPPSVYPNLPTSATSPIYQHQQSNASSYGTPNQHQYQSPQFQ
ISQSTPMYGSQQTGQIKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g12343.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 138 | - |
| g12343.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 138 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
