Gene loci information

Transcript annotation

  • This transcript has been annotated as Annexin B11.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12343 g12343.t8 TSS g12343.t8 22647505 22647505
chr_1 g12343 g12343.t8 isoform g12343.t8 22647634 22650065
chr_1 g12343 g12343.t8 exon g12343.t8.exon1 22647634 22647645
chr_1 g12343 g12343.t8 exon g12343.t8.exon2 22647820 22648288
chr_1 g12343 g12343.t8 exon g12343.t8.exon3 22648513 22648588
chr_1 g12343 g12343.t8 cds g12343.t8.CDS1 22648582 22648588
chr_1 g12343 g12343.t8 exon g12343.t8.exon4 22648649 22649476
chr_1 g12343 g12343.t8 cds g12343.t8.CDS2 22648649 22649476
chr_1 g12343 g12343.t8 exon g12343.t8.exon5 22649541 22649706
chr_1 g12343 g12343.t8 cds g12343.t8.CDS3 22649541 22649590
chr_1 g12343 g12343.t8 exon g12343.t8.exon6 22649939 22650065
chr_1 g12343 g12343.t8 TTS g12343.t8 22650062 22650062

Sequences

>g12343.t8 Gene=g12343 Length=1678
ATGTATCCAAATCAACAATCTGGTTACAATCAGTATAATCCACCATTTGGTGCAAATCCA
AGCATGCCAATGCCTCAATATCCTAATCAGATGCCTCAACCTTTTGGAGCTGGTTATTCT
CAAATGCCTGGAATGCCGATGCCACAACAAAATAATCCAAGCCCTTATGGCGGATTTCAA
GGTCAAATGAATTATCAAAATCAAATGCCATCAATGAATCAGCAAATGCCTTATCAACCT
CATCAACAAAACTTTGATTCATACAATCAGCAGCAGAATTCTTACCAACAACCTTATGCT
CCACCTAGCGTTTATCCAAATTTGCCGACTTCAGCTACCAGTCCTATTTATCAACATCAA
CAAAGTAATGCTTCTTCTTATGGAACTCCAAATCAACATCAATACCAATCACCTCAATTT
CAAATATCACAAAGTACACCAATGTATGGAAGTCAACAAACAGGACAAATTAAAAAGGTT
AGGACGTCCAACAGTTACACCAGCATCGAATTTCAATGCTTCTAATGATTGTGCTATTTT
ACGAAAAGCTATGAAAGGATTTGGAACTGATGAAGATGCTATCATTTCTGTATTATGTCA
TCGAACTGTTGATCAAAGAATGGAAATTGTTCGTACTTATAAGACAGCTTATGGCAAAGA
TCTGCTTAATGATATTCGCTCTGAAACATCAGGAAATTTTGAAAAGATCTTGATTGCACT
ACTTACACCAACAACTGAATTATATTGTCGTGAACTTTATGAAGCAATGGCTGGTGCGGG
AACTGATGAGGATGTACTCATTGAAGTTATGTGCACAATGTCAAATTATGAAATTCGTCA
AATTTGTGCTCAGTATGTACGTATGTATGGACAACCATTAGAACATCAATTACGAAGTGA
TACAAGCGGACATATGAAAAGACTTATGACATCTCTATCAGTTGGAGGACGTGATGAATC
TATGCACACTGATGTTAATCAAGCACGCGCTGATGCAGAAACATTGAGAGCTGCAGGAGT
TGGACGATGGGGAACTGATGAAAGTGAATTCAATCGCATTCTCTGTTTGCGAAATTATGA
ACAAATTAAACTCATATGCCAAGAATATGAAAAAATTACTGGAAGTTCTTTGGAAAAAGA
CATTAAAAAAGAATTTAGTGGTGATATCGAGGATGCTCTTCTTGCCATTATTCGTGTTGC
TAAAAATCGTCCAGAATTCTTTGCTCGTCGTTTGCACAAATCGATGGCTGGTTTAGGCAC
TGATGATAAATCTTTAATTCGTTTGGTTGTCACACGATCTGAAATTGACATGATGGATAT
AAAAGACGAATTTCAACGTTATTATGGAAAGACACTCAAATCATTTATTAAAGGGGACAC
AAGTGGTCATTACAAGCATGCTCTTTATGCTCTTTGTGGCGAAAGTCGAAGTTAAATTAT
AAAAAATAATATCAAAATCCAAAACCGTTTTTCGATTAACTAAAGTTTACTCAAATGGAC
TCAAATAAAGTTAGTTGAGTTTTAATTGAAGAAAATTTTAATTAAATTTAGCAACTAATG
TCAATAATGTAACTATTTTTAAATTTCTTAATTCTATTTTATAAACTAAATATGCTAACA
TTTATATTCATTGTTATCTCTCTCAAAAAAAATTTAATAAAAAGTTTTTATTATTGTT

>g12343.t8 Gene=g12343 Length=294
MKGFGTDEDAIISVLCHRTVDQRMEIVRTYKTAYGKDLLNDIRSETSGNFEKILIALLTP
TTELYCRELYEAMAGAGTDEDVLIEVMCTMSNYEIRQICAQYVRMYGQPLEHQLRSDTSG
HMKRLMTSLSVGGRDESMHTDVNQARADAETLRAAGVGRWGTDESEFNRILCLRNYEQIK
LICQEYEKITGSSLEKDIKKEFSGDIEDALLAIIRVAKNRPEFFARRLHKSMAGLGTDDK
SLIRLVVTRSEIDMMDIKDEFQRYYGKTLKSFIKGDTSGHYKHALYALCGESRS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g12343.t8 Gene3D G3DSA:1.10.220.10 - 1 59 4.6E-23
14 g12343.t8 Gene3D G3DSA:1.10.220.10 - 60 131 9.3E-23
17 g12343.t8 Gene3D G3DSA:1.10.220.10 - 132 219 8.9E-31
15 g12343.t8 Gene3D G3DSA:1.10.220.10 - 221 292 2.3E-27
5 g12343.t8 PANTHER PTHR10502 ANNEXIN 1 290 3.3E-123
6 g12343.t8 PANTHER PTHR10502:SF226 ANNEXIN 1 290 3.3E-123
11 g12343.t8 PRINTS PR00196 Annexin family signature 2 24 2.1E-51
10 g12343.t8 PRINTS PR00196 Annexin family signature 42 58 2.1E-51
12 g12343.t8 PRINTS PR00196 Annexin family signature 69 90 2.1E-51
8 g12343.t8 PRINTS PR00196 Annexin family signature 152 178 2.1E-51
9 g12343.t8 PRINTS PR00196 Annexin family signature 232 252 2.1E-51
7 g12343.t8 PRINTS PR00196 Annexin family signature 276 289 2.1E-51
4 g12343.t8 Pfam PF00191 Annexin 1 57 1.7E-21
2 g12343.t8 Pfam PF00191 Annexin 67 129 7.7E-21
3 g12343.t8 Pfam PF00191 Annexin 148 213 2.5E-23
1 g12343.t8 Pfam PF00191 Annexin 223 288 1.4E-22
18 g12343.t8 ProSitePatterns PS00223 Annexin repeat signature. 5 57 -
19 g12343.t8 ProSitePatterns PS00223 Annexin repeat signature. 236 288 -
25 g12343.t8 ProSiteProfiles PS51897 Annexin repeat profile. 1 59 26.113
24 g12343.t8 ProSiteProfiles PS51897 Annexin repeat profile. 60 131 24.503
27 g12343.t8 ProSiteProfiles PS51897 Annexin repeat profile. 143 215 30.231
26 g12343.t8 ProSiteProfiles PS51897 Annexin repeat profile. 219 290 28.889
20 g12343.t8 SMART SM00335 annex3 5 57 1.2E-24
22 g12343.t8 SMART SM00335 annex3 77 129 7.4E-18
21 g12343.t8 SMART SM00335 annex3 161 213 3.8E-22
23 g12343.t8 SMART SM00335 annex3 236 288 3.9E-22
13 g12343.t8 SUPERFAMILY SSF47874 Annexin 1 291 2.09E-111

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005544 calcium-dependent phospholipid binding MF
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values