General information for g12359.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12359 is located on chr_1: 22882005..22887016 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12359 | g12359.t1 | TTS | g12359.t1 | 22881460 | 22881460 |
| chr_1 | g12359 | g12359.t1 | isoform | g12359.t1 | 22882005 | 22887016 |
| chr_1 | g12359 | g12359.t1 | exon | g12359.t1.exon1 | 22882005 | 22882417 |
| chr_1 | g12359 | g12359.t1 | cds | g12359.t1.CDS1 | 22882005 | 22882417 |
| chr_1 | g12359 | g12359.t1 | exon | g12359.t1.exon2 | 22886579 | 22886876 |
| chr_1 | g12359 | g12359.t1 | cds | g12359.t1.CDS2 | 22886579 | 22886876 |
| chr_1 | g12359 | g12359.t1 | exon | g12359.t1.exon3 | 22886960 | 22887016 |
| chr_1 | g12359 | g12359.t1 | cds | g12359.t1.CDS3 | 22886960 | 22887016 |
| chr_1 | g12359 | g12359.t1 | TSS | g12359.t1 | NA | NA |
Sequences
>g12359.t1 Gene=g12359 Length=768
ATGCGGAACGTCAAGAAGAATATCGTTGCATCATATGCGAGCGTGTTTATTGCTCTCGAA
CCTCAAGCAAGCACTTTCCTGCACAACTGCGATGACAAACATTTAGTTATAAATATAAAT
AGAAATAACGATCACATTACGCCTCCTTCAACTTTAACTTTGCTGCCTCATGCTAGACAA
TTAAGACACAATCAAGATTATCAATTCTCAAACAATTTAAGCAATTATTCTGCCTCTGCC
TATGATTGGTCGACTTTACTATCGTCAAATGACACTGTTGATTATGATATGAGATGTTGT
CATGTTCCTATCATCCACTACTACACTCAAATGGCGTCCTTTCACGATCGTCAAGGCTCA
CAGAGCGGTGTAATTTCGCCAACATCATCAAACTCATCGCAACATAATAATACTCCCTTA
AGAATGCCCGCACCCTCAGCAGCTGGTATAAATGAGCCACAGGAATGTCCATACTGCCGT
CGCACATTCTCGTGCTATTACTCATTGAAACGACACTTTCAGGATAAGCACGAACAGTCA
GACACACTTTATGTGTGCGAATTCTGCCATCGACGTTATCGAACAAAAAATTCACTGACC
ACGCACAAAAGTCTGCAACATCGCGGCTCAAGTGGCATGCTAAAGCGACTTTTAAAGACA
TCCGCGATAAAAAATGTGCTGGGACCACATGTTCCACCACATACACGACCACATTTATTT
GACTTTGCAGCAGAGCTCGGTCAACCGCCACCTGGCATTCCACAATAA
>g12359.t1 Gene=g12359 Length=255
MRNVKKNIVASYASVFIALEPQASTFLHNCDDKHLVININRNNDHITPPSTLTLLPHARQ
LRHNQDYQFSNNLSNYSASAYDWSTLLSSNDTVDYDMRCCHVPIIHYYTQMASFHDRQGS
QSGVISPTSSNSSQHNNTPLRMPAPSAAGINEPQECPYCRRTFSCYYSLKRHFQDKHEQS
DTLYVCEFCHRRYRTKNSLTTHKSLQHRGSSGMLKRLLKTSAIKNVLGPHVPPHTRPHLF
DFAAELGQPPPGIPQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g12359.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 150 | 226 | 9.4E-10 |
| 13 | g12359.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 138 | - |
| 1 | g12359.t1 | Pfam | PF05605 | Drought induced 19 protein (Di19), zinc-binding | 155 | 208 | 1.9E-6 |
| 5 | g12359.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
| 6 | g12359.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 7 | g12359.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 19 | - |
| 8 | g12359.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 20 | 23 | - |
| 4 | g12359.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 255 | - |
| 9 | g12359.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 156 | 177 | - |
| 10 | g12359.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 186 | 207 | - |
| 14 | g12359.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 154 | 182 | 8.954 |
| 15 | g12359.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 184 | 212 | 10.159 |
| 12 | g12359.t1 | SMART | SM00355 | c2h2final6 | 154 | 177 | 0.16 |
| 11 | g12359.t1 | SMART | SM00355 | c2h2final6 | 184 | 207 | 0.039 |
| 2 | g12359.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 153 | 203 | 1.02E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed