Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ubiquinone biosynthesis O-methyltransferase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12373 g12373.t1 TTS g12373.t1 23151964 23151964
chr_1 g12373 g12373.t1 isoform g12373.t1 23152201 23153072
chr_1 g12373 g12373.t1 exon g12373.t1.exon1 23152201 23152520
chr_1 g12373 g12373.t1 cds g12373.t1.CDS1 23152201 23152520
chr_1 g12373 g12373.t1 exon g12373.t1.exon2 23152589 23152759
chr_1 g12373 g12373.t1 cds g12373.t1.CDS2 23152589 23152759
chr_1 g12373 g12373.t1 exon g12373.t1.exon3 23152826 23152840
chr_1 g12373 g12373.t1 cds g12373.t1.CDS3 23152826 23152840
chr_1 g12373 g12373.t1 exon g12373.t1.exon4 23152901 23153072
chr_1 g12373 g12373.t1 cds g12373.t1.CDS4 23152901 23153072
chr_1 g12373 g12373.t1 TSS g12373.t1 NA NA

Sequences

>g12373.t1 Gene=g12373 Length=678
ATGCCAAAACCAAAAAGTAACGATACTTCGGTCTCGGCGCTTGCAGCAAAAAGTATTAAT
CCAGATGAAATTGATTGGTTTAATAAACAAGCACATGAATGGTGGGATCCAAATGGAGTT
GAACATATGCTCCATGACTATAATCATCTAAGAATTCCATGGATTCGCGATGGTGCATTA
ATTTTAGATGCTGGTTGTGGTGGTGGTATTCTAACTGAAGCAATTGGTCGTTCCAAAGGC
ACAGTTGTTGGACTTGATTGTGCAAAACAGCTGATTGATTTAACTGAAAATCATTTGGCA
CCACAAGATGATATTAAACCTTATATAACTTATGTTTGTGAAACAATTGAAGAACATTCA
GCATTTTTAGAATGTTGTGTGAAAGCTCTTAAGCCTGGTGGAAGTATTTTTATCACAACA
ATTAGTAAAACATTCATGGGATGGTTCATTGCCAAATTATGGGCTGAATATATCACTGGA
ATCATCAGAAGAGGCAGCCATGAATTCAGACTTTTCATCACACCCAAAGAAGTCTCCAAA
ATTCTCAAAGAATTCAATTGTAAAACAGAAAAAGTGAAAGGTGTTCGCTACGATTTTTTC
AGACGACGTGAAAATAAATTTCAACATACATTTTATCATGGTGTTGCTTATACATTGCAA
GCAGTAAAAGAAAAATAA

>g12373.t1 Gene=g12373 Length=225
MPKPKSNDTSVSALAAKSINPDEIDWFNKQAHEWWDPNGVEHMLHDYNHLRIPWIRDGAL
ILDAGCGGGILTEAIGRSKGTVVGLDCAKQLIDLTENHLAPQDDIKPYITYVCETIEEHS
AFLECCVKALKPGGSIFITTISKTFMGWFIAKLWAEYITGIIRRGSHEFRLFITPKEVSK
ILKEFNCKTEKVKGVRYDFFRRRENKFQHTFYHGVAYTLQAVKEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g12373.t1 CDD cd02440 AdoMet_MTases 61 139 8e-07
9 g12373.t1 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 5 222 0e+00
2 g12373.t1 PANTHER PTHR43464 METHYLTRANSFERASE 9 57 0e+00
5 g12373.t1 PANTHER PTHR43464:SF25 UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL 9 57 0e+00
4 g12373.t1 PANTHER PTHR43464 METHYLTRANSFERASE 60 118 0e+00
7 g12373.t1 PANTHER PTHR43464:SF25 UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL 60 118 0e+00
3 g12373.t1 PANTHER PTHR43464 METHYLTRANSFERASE 112 199 0e+00
6 g12373.t1 PANTHER PTHR43464:SF25 UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL 112 199 0e+00
1 g12373.t1 Pfam PF13489 Methyltransferase domain 53 188 0e+00
8 g12373.t1 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 25 201 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed