Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ubiquinone biosynthesis O-methyltransferase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12376 g12376.t1 isoform g12376.t1 23164074 23164904
chr_1 g12376 g12376.t1 exon g12376.t1.exon1 23164074 23164269
chr_1 g12376 g12376.t1 cds g12376.t1.CDS1 23164074 23164269
chr_1 g12376 g12376.t1 exon g12376.t1.exon2 23164333 23164904
chr_1 g12376 g12376.t1 cds g12376.t1.CDS2 23164333 23164904
chr_1 g12376 g12376.t1 TSS g12376.t1 NA NA
chr_1 g12376 g12376.t1 TTS g12376.t1 NA NA

Sequences

>g12376.t1 Gene=g12376 Length=768
ATGCAAGATAAAAATGTTGATTTAAAAGACATCAAAAGATTCAATAAACAAGCCAAAGAA
TGGTGGGATCCAAATGGAGTTCAACATGGATTGCATGCTATGAATTATATGAGAGTTCCT
TGGGTTCGTGATAGTCTAAAAGAGACAAATTATATCAGTAAAGATGCAACAAATCTCGAA
GGATGTTTGATTTTAGATGCTGGCTGTGGAGGAGGAATTTATGCTGAAGGTTTAGCAAAA
TTGGGTGCAAAAGTGATTGGCTTAGATTGTGCTAGAGAGTTGTTGGATGTTGCACAAAAT
CATCTCAATACACAACATGATATTAAAGATAAAGTGACTTATGTTTTTGAGACTATTGAA
GAACATTGCTTAAAAAATGAGAACAAATATGATGCAATTGTGTGCAGTGAAGTCATCGAG
CATATTATTGATAAAAATTCATTCCTTGAAGCTTGCATCAAAACACTTAAACCTGGTGGA
AGCATTTTTATGACAACAATCAGTCACACTTTTGCTGCTTGGTTTATTAATATCTTATGG
GGTGAATACATATTAGGACTTATCAAACGTGGCAGTCATGATCATCGACTTTTTATTGAT
CATAAGGATTTATCAAAAATTCTAGAAATTAATAATACAAAGACAGTGTCAGTGAAAGGC
ACTTTTTATGATATTTTTGCAAGAAATCCAGAGAAAAAATGGAAATTTGGACAATCTACT
GCTATTTCTTATGCACTTCATGCTGTTAAAGAAAATTTAATTATTTAA

>g12376.t1 Gene=g12376 Length=255
MQDKNVDLKDIKRFNKQAKEWWDPNGVQHGLHAMNYMRVPWVRDSLKETNYISKDATNLE
GCLILDAGCGGGIYAEGLAKLGAKVIGLDCARELLDVAQNHLNTQHDIKDKVTYVFETIE
EHCLKNENKYDAIVCSEVIEHIIDKNSFLEACIKTLKPGGSIFMTTISHTFAAWFINILW
GEYILGLIKRGSHDHRLFIDHKDLSKILEINNTKTVSVKGTFYDIFARNPEKKWKFGQST
AISYALHAVKENLII

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g12376.t1 CDD cd02440 AdoMet_MTases 64 165 0.0000
6 g12376.t1 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 10 251 0.0000
4 g12376.t1 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 10 251 32.5476
2 g12376.t1 PANTHER PTHR43464 METHYLTRANSFERASE 5 250 0.0000
3 g12376.t1 PANTHER PTHR43464:SF25 UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL 5 250 0.0000
1 g12376.t1 Pfam PF08241 Methyltransferase domain 65 163 0.0000
5 g12376.t1 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 13 231 0.0000
7 g12376.t1 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 11 241 0.0000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity MF
GO:0008168 methyltransferase activity MF
GO:0006744 ubiquinone biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed