General information for g12384.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquinone biosynthesis O-methyltransferase.
Parent gene
- The parent gene g12384 is located on chr_1: 23218274..23218476 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12384 | g12384.t3 | TTS | g12384.t3 | 23216757 | 23216757 |
| chr_1 | g12384 | g12384.t3 | isoform | g12384.t3 | 23217159 | 23218476 |
| chr_1 | g12384 | g12384.t3 | exon | g12384.t3.exon1 | 23217159 | 23218175 |
| chr_1 | g12384 | g12384.t3 | cds | g12384.t3.CDS1 | 23217775 | 23218175 |
| chr_1 | g12384 | g12384.t3 | exon | g12384.t3.exon2 | 23218275 | 23218476 |
| chr_1 | g12384 | g12384.t3 | cds | g12384.t3.CDS2 | 23218275 | 23218476 |
| chr_1 | g12384 | g12384.t3 | TSS | g12384.t3 | 23218654 | 23218654 |
Sequences
>g12384.t3 Gene=g12384 Length=1219
ATGGAATTTTTGGAAAAAAATGTTGATTTAAAAGACATCAAAAGATTCAATAAACAAGCC
AAAGAATGGTGGGATCCAAAAGGTGTTCAACATGGATTGCATGCTATGAATTACATGAGA
GTTCCTTGGGTTCTTGAAGGACTTAAAGAGACAAATTATATCAGTAAAGATGCAACAAAT
CTCGAAGGATGTTTGATTTTAGCAAAGTTGGGTGCAAAAGTGATTGGCTTAGATTGTGCT
AGAGAGTTGTTGGATGTTGCACAAAATCATCTCAATACACAACATGATATTAAAGATAAA
GTGACTTATGTTTGTGAGACTATTGAAGAACATTGCTTAAAAAATGAGAACAAATATGAT
GCAATTGTGTGCAGTGAAGTCATCGAGCATATTATCGATAAAAATTCATTCCTTGAAGCT
TGCATTAAAACACTTAAACCTGGTGGAAGTATTTTTATGACAACAATCAGTCGCACTTTT
GCTGCTTGGTTTCTTTATAAATTTATGGGTGAATATGTGTTGGGTTTGATTGAAAGAGGA
ACTCATGATCCAAAACTTTTTATTGATTACAAAGATTTTAGCAAAAATCTTAGAAAAGAA
TAATGTGAAAATTTTGTCAGTGAAAGGAACAACTTATGATTTTTATAGACAAAGACAAGA
CAAGAAATGGCACTTCAGTTCAAATACAAAAGTTTCGTATGCGCTTCAAGGAATTAAAGA
AAGCTAAATATCTTTTTGTGATTAAAAAGTGAAAAATCTTAAAAAGCAAAATTGTATACA
ATTTGAAATACTTTGAAGGAAAAAGTTAAGAAATTTTAAATTTTTTTGAAATTATTAAAA
AAATATTGCAAAATATTCTAAAAAATTCCAAATTATTTGAATAATTTTGTAATTAGTTAT
TCGTTATTTACAACGATGATATCATAAATTTACATTTTTCTCTATAACTCCATTTAAAGT
TTCATTTTCTACCAAAAAAATATTGAGTAAATTTTTTACTAATCCATTCAAATGTCAACA
GCCTTCATTAAGTTGGAACTCCTAAAAATATTTTTTGTTTACTTGCAATTAAATTAAAGT
TTGAACTGTTTATCATTTGCTTTAATAAACATTGACTTATTTTAAATAAATATTTTAAAT
TCAATTTTAAGCCCCATAGAATTTTTCTCAAATAATCAGCAGAAGTAGTTCAAGAATAAA
TCAAAAAACAATTGCAAAA
>g12384.t3 Gene=g12384 Length=200
MEFLEKNVDLKDIKRFNKQAKEWWDPKGVQHGLHAMNYMRVPWVLEGLKETNYISKDATN
LEGCLILAKLGAKVIGLDCARELLDVAQNHLNTQHDIKDKVTYVCETIEEHCLKNENKYD
AIVCSEVIEHIIDKNSFLEACIKTLKPGGSIFMTTISRTFAAWFLYKFMGEYVLGLIERG
THDPKLFIDYKDFSKNLRKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g12384.t3 | CDD | cd02440 | AdoMet_MTases | 63 | 154 | 0 |
| 7 | g12384.t3 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 12 | 200 | 0 |
| 3 | g12384.t3 | PANTHER | PTHR43464 | METHYLTRANSFERASE | 7 | 57 | 0 |
| 5 | g12384.t3 | PANTHER | PTHR43464:SF25 | UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL | 7 | 57 | 0 |
| 2 | g12384.t3 | PANTHER | PTHR43464 | METHYLTRANSFERASE | 67 | 195 | 0 |
| 4 | g12384.t3 | PANTHER | PTHR43464:SF25 | UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL | 67 | 195 | 0 |
| 1 | g12384.t3 | Pfam | PF08241 | Methyltransferase domain | 65 | 152 | 0 |
| 6 | g12384.t3 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 16 | 199 | 0 |
| 8 | g12384.t3 | TIGRFAM | TIGR01983 | UbiG: 3-demethylubiquinone-9 3-O-methyltransferase | 13 | 199 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008425 | 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity | MF |
| GO:0008168 | methyltransferase activity | MF |
| GO:0006744 | ubiquinone biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
