General information for g12407.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as histone-arginine N-methyltransferase.
Parent gene
- The parent gene g12407 is located on chr_1: 23417864..23419381 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12407 | g12407.t1 | TSS | g12407.t1 | 23417811 | 23417811 |
| chr_1 | g12407 | g12407.t1 | isoform | g12407.t1 | 23417864 | 23419381 |
| chr_1 | g12407 | g12407.t1 | exon | g12407.t1.exon1 | 23417864 | 23417976 |
| chr_1 | g12407 | g12407.t1 | cds | g12407.t1.CDS1 | 23417864 | 23417976 |
| chr_1 | g12407 | g12407.t1 | exon | g12407.t1.exon2 | 23418042 | 23418132 |
| chr_1 | g12407 | g12407.t1 | cds | g12407.t1.CDS2 | 23418042 | 23418132 |
| chr_1 | g12407 | g12407.t1 | exon | g12407.t1.exon3 | 23418182 | 23419381 |
| chr_1 | g12407 | g12407.t1 | cds | g12407.t1.CDS3 | 23418182 | 23419381 |
| chr_1 | g12407 | g12407.t1 | TTS | g12407.t1 | NA | NA |
Sequences
>g12407.t1 Gene=g12407 Length=1404
ATGGATCCGATATCGTTGGATATTGATGAAAGACACGATTTTATTTGTGATACGGTCCAT
AATCTTATTAATAACGCGTTTCAAAGAAGAGCAATGTTTAGTAGAAATTTAAAAAACTAT
TTAAGGCTGCAAAAATATCATTTTAATGCTGATCAAATGCCTGAGTTTATCTATTTGAAA
TCAGGGTACATAAACTTTCCAAAGGAAAGTGATGAAGAAGAATTTGATTACGATTATAAC
AAAGAATTTGTTGTCAATTTGTTTAAAGAAGCGATGAATATTGTTAAAACAATGAATAAT
GAAGAAAAAGTGACGATTTTAAAAGCATTTTGGAACAATAAATTATTAAGACTGACCTTA
AATTTCGAAGATATTTCACAATTTTACTATGAAATTGATCAACAATTAAGAATTAGATGC
ATGCTGGAAATTGATAACAATAATGAAAAAGATTTTTGCTCAAGCGATTGTTACAAATCA
AATAAAACTTTTGACAAATTTGTATACACAATACTTGATGAATATAAAATTAGAGATTCA
ATGATGATGACTGGTAATAATAATTATTGCCAAATTGCAAAATTAGTGAACTCATTGACT
TGCAATCAGGTATTTCAAGTGATTAAAGAAAAACGAATCAAAATATATAGCACTGATTTA
AGACCGTACGTTGATAAAAGAACAATGAAACAAAAATTATTGTTCTTTACAAAAAGAAAC
GGAGATGAAAAACTGCTTTTAAATAATTTAGATATGTACAAACCATGCAATCATAAAGGA
TTATGTGATACATCATGTCCGTGCTATATTGGGAAAAATTATTGCGAAAAATACTGTGCA
TGTGATCAAAATTGCTTGAACAAATTTGAAGGTTGCGCCTGCACTGCCAAATGTCAAACT
AATGCCTGTTCATGTTTCGTTGGAAATCGAGAATGTGATCCTATAGCATGTAAAAAGCAC
AATGATAAGAAATGTAGCTGCAAAAATATGTCGTTACAATCGGATACTTTGAAGAAATTA
GAAATAAAAATGTCGACAATAGATGGTATAGGATTAGGAGCATTCGCAGCTGAACCGATT
AATGCAAATGATTTTATAATTGAATACACTGGAGAACTGATTACGCATGAAGAAGGAGAA
AAGAGAGCTGAGTATTATAGCGAGATAAAAAGTATATATCTTTTCTCGATATGCAAGGGA
TATGATATTGACGCATTTAAATTTGGAAATGAAAGTAGATTTATTAATCACTCGTCTGCA
CCAAATTGTGAAGTAAAATGTTTAATTGTACAAGGAGTAAAAAGAATCGCATTTTTTGCT
ATCAAAGATATAAAAGTAGGTGAAGAATTATTCTTCAAATATCAATTCACAAAGGACCAT
GAAAAATTATATTTTAAGAAATAG
>g12407.t1 Gene=g12407 Length=467
MDPISLDIDERHDFICDTVHNLINNAFQRRAMFSRNLKNYLRLQKYHFNADQMPEFIYLK
SGYINFPKESDEEEFDYDYNKEFVVNLFKEAMNIVKTMNNEEKVTILKAFWNNKLLRLTL
NFEDISQFYYEIDQQLRIRCMLEIDNNNEKDFCSSDCYKSNKTFDKFVYTILDEYKIRDS
MMMTGNNNYCQIAKLVNSLTCNQVFQVIKEKRIKIYSTDLRPYVDKRTMKQKLLFFTKRN
GDEKLLLNNLDMYKPCNHKGLCDTSCPCYIGKNYCEKYCACDQNCLNKFEGCACTAKCQT
NACSCFVGNRECDPIACKKHNDKKCSCKNMSLQSDTLKKLEIKMSTIDGIGLGAFAAEPI
NANDFIIEYTGELITHEEGEKRAEYYSEIKSIYLFSICKGYDIDAFKFGNESRFINHSSA
PNCEVKCLIVQGVKRIAFFAIKDIKVGEELFFKYQFTKDHEKLYFKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g12407.t1 | Gene3D | G3DSA:2.170.270.10 | SET domain | 253 | 457 | 0.000 |
| 2 | g12407.t1 | PANTHER | PTHR45747 | HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) | 18 | 460 | 0.000 |
| 3 | g12407.t1 | PANTHER | PTHR45747:SF4 | HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) | 18 | 460 | 0.000 |
| 1 | g12407.t1 | Pfam | PF00856 | SET domain | 351 | 454 | 0.000 |
| 7 | g12407.t1 | ProSiteProfiles | PS51633 | CXC domain profile. | 231 | 336 | 14.405 |
| 8 | g12407.t1 | ProSiteProfiles | PS50280 | SET domain profile. | 338 | 455 | 16.332 |
| 5 | g12407.t1 | SMART | SM00317 | set_7 | 338 | 461 | 0.000 |
| 4 | g12407.t1 | SUPERFAMILY | SSF82199 | SET domain | 227 | 462 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed