Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative UMP-CMP kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12409 g12409.t1 isoform g12409.t1 23425422 23426227
chr_1 g12409 g12409.t1 exon g12409.t1.exon1 23425422 23425467
chr_1 g12409 g12409.t1 cds g12409.t1.CDS1 23425422 23425467
chr_1 g12409 g12409.t1 exon g12409.t1.exon2 23425528 23425733
chr_1 g12409 g12409.t1 cds g12409.t1.CDS2 23425528 23425733
chr_1 g12409 g12409.t1 exon g12409.t1.exon3 23425863 23425902
chr_1 g12409 g12409.t1 cds g12409.t1.CDS3 23425863 23425902
chr_1 g12409 g12409.t1 exon g12409.t1.exon4 23425992 23426227
chr_1 g12409 g12409.t1 cds g12409.t1.CDS4 23425992 23426227
chr_1 g12409 g12409.t1 TTS g12409.t1 23426521 23426521
chr_1 g12409 g12409.t1 TSS g12409.t1 NA NA

Sequences

>g12409.t1 Gene=g12409 Length=528
ATGGCAAACGAAAAACCAAAAATTATTTTTGTTCTCGGTGCACCAGGTGCTGGAAAAGGA
ACTCAATGTGAGAAAATTGTAAATTCATTTGGATTCAAGCATCTTTCTGCAGGTGATTTA
TTAAGAGAAGAACGAGCACGAGAAGGATCACAATTTGGACAATTAATTGAAGACTATATT
ACTAATGGAAAAATTGTTCCAGTTGAAATTACTTGTAGTTTATTAGAAAATGCAATGATC
AAATCTAAAAAGGAAACAGGAGTCAATAAGTTTCTAATCGATGGCTTTCCACAAAAGTGT
GTCGAGAGATGCTTAAAAAGAGGTCAAGCTGGAAGTGGTCGCACTGATGATAATCTCGAG
AGTCTCAAGAAACGTTTCAATACATATTTAAATGACACAATGCCAATAATTGACCATTAT
CGTTCAATGAATAAAGTTAGAAAAATTGACACAAGCCCAAGCGCTAACGAAGTTTTTGCT
GAAGTTGAATTAGCATTTAAAGAAGCGCAGGCAGCTAATTTATTTTAA

>g12409.t1 Gene=g12409 Length=175
MANEKPKIIFVLGAPGAGKGTQCEKIVNSFGFKHLSAGDLLREERAREGSQFGQLIEDYI
TNGKIVPVEITCSLLENAMIKSKKETGVNKFLIDGFPQKCVERCLKRGQAGSGRTDDNLE
SLKKRFNTYLNDTMPIIDHYRSMNKVRKIDTSPSANEVFAEVELAFKEAQAANLF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g12409.t1 CDD cd01428 ADK 8 158 1.58616E-53
13 g12409.t1 Coils Coil Coil 173 175 -
11 g12409.t1 Gene3D G3DSA:3.40.50.300 - 1 98 1.9E-32
12 g12409.t1 Gene3D G3DSA:3.40.50.300 - 99 168 7.0E-15
6 g12409.t1 Hamap MF_00235 Adenylate kinase [adk]. 7 167 30.869225
2 g12409.t1 PANTHER PTHR23359 NUCLEOTIDE KINASE 6 99 1.7E-52
4 g12409.t1 PANTHER PTHR23359:SF206 UMP-CMP KINASE 6 99 1.7E-52
3 g12409.t1 PANTHER PTHR23359 NUCLEOTIDE KINASE 99 167 1.7E-52
5 g12409.t1 PANTHER PTHR23359:SF206 UMP-CMP KINASE 99 167 1.7E-52
9 g12409.t1 PRINTS PR00094 Adenylate kinase signature 10 23 1.2E-10
8 g12409.t1 PRINTS PR00094 Adenylate kinase signature 38 52 1.2E-10
7 g12409.t1 PRINTS PR00094 Adenylate kinase signature 91 107 1.2E-10
1 g12409.t1 Pfam PF00406 Adenylate kinase 11 100 3.3E-28
10 g12409.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2 165 1.39E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed