Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative UMP-CMP kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12409 g12409.t4 isoform g12409.t4 23425422 23426227
chr_1 g12409 g12409.t4 exon g12409.t4.exon1 23425422 23425467
chr_1 g12409 g12409.t4 cds g12409.t4.CDS1 23425422 23425467
chr_1 g12409 g12409.t4 exon g12409.t4.exon2 23425528 23425733
chr_1 g12409 g12409.t4 cds g12409.t4.CDS2 23425528 23425733
chr_1 g12409 g12409.t4 exon g12409.t4.exon3 23425863 23426227
chr_1 g12409 g12409.t4 cds g12409.t4.CDS3 23425863 23426015
chr_1 g12409 g12409.t4 TTS g12409.t4 23426521 23426521
chr_1 g12409 g12409.t4 TSS g12409.t4 NA NA

Sequences

>g12409.t4 Gene=g12409 Length=617
ATGGCAAACGAAAAACCAAAAATTATTTTTGTTCTCGGTGCACCAGGTGCTGGAAAAGGA
ACTCAATGTGAGAAAATTGTAAATTCATTTGGATTCAAGCATCTTTCTGCAGGTGATTTA
TTAAGAGAAGAACGAGCACGAGAAGGATCACAATTTGGACAATTAATTGAAGACTATATT
ACTAATGGAAAAATTGTTCCAGTTGAAATTACTTGTAGTTTATTAGAAAATGCAATGATC
AAATCTAAAAAGGAAACAGGAGTCAATAAGTTTCTAATCGATGGCTTTCCACGTAATGAA
GACAATTTACAAGGCTGGGAAAGACAAATGGCAGAAAAAGTCGATTTTCTTTTCGTTCTC
TTTTTCTCGATTGCTCGGAAGAAAAGTGTGTCGAGAGATGCTTAAAAAGAGGTCAAGCTG
GAAGTGGTCGCACTGATGATAATCTCGAGAGTCTCAAGAAACGTTTCAATACATATTTAA
ATGACACAATGCCAATAATTGACCATTATCGTTCAATGAATAAAGTTAGAAAAATTGACA
CAAGCCCAAGCGCTAACGAAGTTTTTGCTGAAGTTGAATTAGCATTTAAAGAAGCGCAGG
CAGCTAATTTATTTTAA

>g12409.t4 Gene=g12409 Length=134
MANEKPKIIFVLGAPGAGKGTQCEKIVNSFGFKHLSAGDLLREERAREGSQFGQLIEDYI
TNGKIVPVEITCSLLENAMIKSKKETGVNKFLIDGFPRNEDNLQGWERQMAEKVDFLFVL
FFSIARKKSVSRDA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g12409.t4 CDD cd01428 ADK 8 132 1.54466E-45
9 g12409.t4 Gene3D G3DSA:3.40.50.300 - 1 133 5.1E-38
4 g12409.t4 Hamap MF_00235 Adenylate kinase [adk]. 7 133 22.172163
2 g12409.t4 PANTHER PTHR23359:SF189 UMP-CMP KINASE 2 7 126 1.5E-44
3 g12409.t4 PANTHER PTHR23359 NUCLEOTIDE KINASE 7 126 1.5E-44
7 g12409.t4 PRINTS PR00094 Adenylate kinase signature 10 23 5.6E-14
6 g12409.t4 PRINTS PR00094 Adenylate kinase signature 38 52 5.6E-14
5 g12409.t4 PRINTS PR00094 Adenylate kinase signature 91 107 5.6E-14
1 g12409.t4 Pfam PF00406 Adenylate kinase 11 130 9.6E-33
11 g12409.t4 ProSitePatterns PS00113 Adenylate kinase signature. 91 102 -
8 g12409.t4 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1 117 2.03E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed