Gene loci information

Transcript annotation

  • This transcript has been annotated as UMP-CMP kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12412 g12412.t5 TSS g12412.t5 23433644 23433644
chr_1 g12412 g12412.t5 isoform g12412.t5 23433828 23434633
chr_1 g12412 g12412.t5 exon g12412.t5.exon1 23433828 23433873
chr_1 g12412 g12412.t5 cds g12412.t5.CDS1 23433828 23433873
chr_1 g12412 g12412.t5 exon g12412.t5.exon2 23433932 23434140
chr_1 g12412 g12412.t5 cds g12412.t5.CDS2 23433932 23434140
chr_1 g12412 g12412.t5 exon g12412.t5.exon3 23434271 23434633
chr_1 g12412 g12412.t5 cds g12412.t5.CDS3 23434271 23434633
chr_1 g12412 g12412.t5 TTS g12412.t5 23434931 23434931

Sequences

>g12412.t5 Gene=g12412 Length=618
ATGGCAAACGAAAAACCAAAAATTATTTTTGTTCTCGGTGCACCAGAAGGTGCTGGAAAA
GGAACTCAATGTGAGAAAATTGTAAATTCATTTGGATTCAAGCATCTTTCTGCAGGTGAT
TTATTAAGAGAAGAACGAGCACGAGAAGGATCACAATTTGGACAATTAATTGAAGACTAT
ATTACTAATGGAAAAATTGTTCCAGTTGAAATTACTTGTAGTTTATTAGAAAATGCAATG
ATCAAATCTAAAAAGGAAACAGGAGTCAATAAGTTTCTAATCGATGGCTTTCCACGTAAT
GAAGACAATTTACAAGGCTGGGAAAGACAAATGGCAGAAAAAGTCGATTTTCTTTTCGTT
CTCTTTCTCGATTGCTCGGAAGAAAAGTGTGTCGAGAGATGCTTAAAAAGAGGTCAAGCT
GGAAGTGGTCGCACTGATGATAATCTCGAGAGTCTCAAGAAACGTTTCAATACATATTTA
AATGACACAATGCCAATAATTGACCATTATCGTTCAATGAATAAAGTTAGAAAAATTGAC
ACAAGCCCAAGCGCTAACGAAGTTTTTGCTGAAGTTGAATTAGCATTTAAAGAAGCGCAG
GCAGCTAATTTATTTTAA

>g12412.t5 Gene=g12412 Length=205
MANEKPKIIFVLGAPEGAGKGTQCEKIVNSFGFKHLSAGDLLREERAREGSQFGQLIEDY
ITNGKIVPVEITCSLLENAMIKSKKETGVNKFLIDGFPRNEDNLQGWERQMAEKVDFLFV
LFLDCSEEKCVERCLKRGQAGSGRTDDNLESLKKRFNTYLNDTMPIIDHYRSMNKVRKID
TSPSANEVFAEVELAFKEAQAANLF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g12412.t5 CDD cd01428 ADK 8 188 2.84211E-67
12 g12412.t5 Gene3D G3DSA:3.40.50.300 - 1 198 4.1E-60
4 g12412.t5 Hamap MF_03172 UMP-CMP kinase [CMPK1]. 6 199 42.516293
5 g12412.t5 Hamap MF_00235 Adenylate kinase [adk]. 7 197 35.901154
2 g12412.t5 PANTHER PTHR23359:SF189 UMP-CMP KINASE 2 8 200 1.4E-66
3 g12412.t5 PANTHER PTHR23359 NUCLEOTIDE KINASE 8 200 1.4E-66
10 g12412.t5 PRINTS PR00094 Adenylate kinase signature 11 24 4.0E-21
8 g12412.t5 PRINTS PR00094 Adenylate kinase signature 39 53 4.0E-21
9 g12412.t5 PRINTS PR00094 Adenylate kinase signature 92 108 4.0E-21
7 g12412.t5 PRINTS PR00094 Adenylate kinase signature 144 159 4.0E-21
6 g12412.t5 PRINTS PR00094 Adenylate kinase signature 161 175 4.0E-21
1 g12412.t5 Pfam PF00406 Adenylate kinase 11 173 2.8E-42
14 g12412.t5 ProSitePatterns PS00113 Adenylate kinase signature. 92 103 -
11 g12412.t5 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 3 195 1.47E-34
15 g12412.t5 TIGRFAM TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family 8 196 9.6E-81

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009041 uridylate kinase activity MF
GO:0006221 pyrimidine nucleotide biosynthetic process BP
GO:0005524 ATP binding MF
GO:0006207 ‘de novo’ pyrimidine nucleobase biosynthetic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0004127 cytidylate kinase activity MF
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed