Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative UMP-CMP kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12412 g12412.t8 TSS g12412.t8 23433644 23433644
chr_1 g12412 g12412.t8 isoform g12412.t8 23433828 23434633
chr_1 g12412 g12412.t8 exon g12412.t8.exon1 23433828 23434140
chr_1 g12412 g12412.t8 cds g12412.t8.CDS1 23434123 23434140
chr_1 g12412 g12412.t8 exon g12412.t8.exon2 23434271 23434633
chr_1 g12412 g12412.t8 cds g12412.t8.CDS2 23434271 23434633
chr_1 g12412 g12412.t8 TTS g12412.t8 23434931 23434931

Sequences

>g12412.t8 Gene=g12412 Length=676
ATGGCAAACGAAAAACCAAAAATTATTTTTGTTCTCGGTGCACCAGGTAAATATCTTGTG
TTTATTAACTCTAATAATCAATTAATTTATTTTGCATACGTTTTAAGGTGCTGGAAAAGG
AACTCAATGTGAGAAAATTGTAAATTCATTTGGATTCAAGCATCTTTCTGCAGGTGATTT
ATTAAGAGAAGAACGAGCACGAGAAGGATCACAATTTGGACAATTAATTGAAGACTATAT
TACTAATGGAAAAATTGTTCCAGTTGAAATTACTTGTAGTTTATTAGAAAATGCAATGAT
CAAATCTAAAAAGGAAACAGGAGTCAATAAGTTTCTAATCGATGGCTTTCCACGTAATGA
AGACAATTTACAAGGCTGGGAAAGACAAATGGCAGAAAAAGTCGATTTTCTTTTCGTTCT
CTTTCTCGATTGCTCGGAAGAAAAGTGTGTCGAGAGATGCTTAAAAAGAGGTCAAGCTGG
AAGTGGTCGCACTGATGATAATCTCGAGAGTCTCAAGAAACGTTTCAATACATATTTAAA
TGACACAATGCCAATAATTGACCATTATCGTTCAATGAATAAAGTTAGAAAAATTGACAC
AAGCCCAAGCGCTAACGAAGTTTTTGCTGAAGTTGAATTAGCATTTAAAGAAGCGCAGGC
AGCTAATTTATTTTAA

>g12412.t8 Gene=g12412 Length=126
MIKSKKETGVNKFLIDGFPRNEDNLQGWERQMAEKVDFLFVLFLDCSEEKCVERCLKRGQ
AGSGRTDDNLESLKKRFNTYLNDTMPIIDHYRSMNKVRKIDTSPSANEVFAEVELAFKEA
QAANLF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g12412.t8 CDD cd01428 ADK 1 109 3.07893E-31
9 g12412.t8 Gene3D G3DSA:3.40.50.300 - 1 120 1.3E-29
2 g12412.t8 PANTHER PTHR23359:SF189 UMP-CMP KINASE 2 10 121 1.2E-32
3 g12412.t8 PANTHER PTHR23359 NUCLEOTIDE KINASE 10 121 1.2E-32
6 g12412.t8 PRINTS PR00094 Adenylate kinase signature 13 29 2.0E-12
5 g12412.t8 PRINTS PR00094 Adenylate kinase signature 65 80 2.0E-12
4 g12412.t8 PRINTS PR00094 Adenylate kinase signature 82 96 2.0E-12
1 g12412.t8 Pfam PF00406 Adenylate kinase 7 94 9.2E-17
8 g12412.t8 ProSitePatterns PS00113 Adenylate kinase signature. 13 24 -
7 g12412.t8 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 12 117 3.24E-17

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values