General information for g12424.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12424 is located on chr_1: 23507502..23515129 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12424 | g12424.t10 | isoform | g12424.t10 | 23500058 | 23507770 |
| chr_1 | g12424 | g12424.t10 | exon | g12424.t10.exon1 | 23500058 | 23500158 |
| chr_1 | g12424 | g12424.t10 | exon | g12424.t10.exon2 | 23500299 | 23500361 |
| chr_1 | g12424 | g12424.t10 | exon | g12424.t10.exon3 | 23504713 | 23504893 |
| chr_1 | g12424 | g12424.t10 | cds | g12424.t10.CDS1 | 23504831 | 23504893 |
| chr_1 | g12424 | g12424.t10 | exon | g12424.t10.exon4 | 23507150 | 23507324 |
| chr_1 | g12424 | g12424.t10 | cds | g12424.t10.CDS2 | 23507150 | 23507324 |
| chr_1 | g12424 | g12424.t10 | exon | g12424.t10.exon5 | 23507394 | 23507644 |
| chr_1 | g12424 | g12424.t10 | cds | g12424.t10.CDS3 | 23507394 | 23507512 |
| chr_1 | g12424 | g12424.t10 | exon | g12424.t10.exon6 | 23507698 | 23507770 |
| chr_1 | g12424 | g12424.t10 | TSS | g12424.t10 | NA | NA |
| chr_1 | g12424 | g12424.t10 | TTS | g12424.t10 | NA | NA |
Sequences
>g12424.t10 Gene=g12424 Length=844
ACAAAACCACCAACACCAGTTGAAAGATCAATTACACCACCAGCATTGAAAATAAAAACT
CCCTCACCAGAGCAATGATGAAAAAATTCCAGAAGGCCCACCCAAAGTTATTAAAAGAAA
AGCTCCAGTTCCAATTTCGACTGAACAGTCTCAAGATATTGCAATATCACGACCACAAGC
ACCAAAAGTGCCAATCAATCAAGGCATGATTCCACCACCACCTAAAAAAGAAGAAAGCAA
GCCACCAGTTCAAATTCCAATTTTATCAACAACACCAGCAACGCCTTTACCTTTGCAAAA
GCATTTTGTTGAACCAACACCGCCACCTTCTGCTATTGCAATCGATTCTGCTGCCTCATT
TAGCAGCACTGAAAAACTTGTCACATCAACCGATCCTGGTAAAGAAGCAAATTTTGCTGC
ATCATCGCCACCAATGTTGCGACCCGTAAATAAAATTGAGGATGTAAAAACAATAAAAAG
GCAAATGAAGACTGGTTGGGGAAAAAAATTCTTTCCACCATTTTGTGTATGTCGTGTGTC
TTTCTTTTTTGACATCAAGTGAAATGGTTACATAAGATGAGAATTCTCAAGATAAAAGTC
CTCTTCACATACATGATACATTAGTACTTTTTATCATCCATGAATTTCGTTTTTTTAAGC
CTTAAATTTTTCTTTTTTTGTTAAATTTAACTGATATTCGACACTTGAATGCATACTTGA
CTGTATATCCACAGTGACTTGACAATGAAAAAAGAGACTTTTTTGTAAGTCAACTTGCAT
GAATTAGTCAAGTCACTTTACGCATATGAGTCAAGTATGTATGGAACTAAAATGTTCAAC
TAAC
>g12424.t10 Gene=g12424 Length=118
MIPPPPKKEESKPPVQIPILSTTPATPLPLQKHFVEPTPPPSAIAIDSAASFSSTEKLVT
STDPGKEANFAASSPPMLRPVNKIEDVKTIKRQMKTGWGKKFFPPFCVCRVSFFFDIK
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed