Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12424 g12424.t5 isoform g12424.t5 23500058 23507770
chr_1 g12424 g12424.t5 exon g12424.t5.exon1 23500058 23500361
chr_1 g12424 g12424.t5 cds g12424.t5.CDS1 23500305 23500361
chr_1 g12424 g12424.t5 exon g12424.t5.exon2 23507150 23507320
chr_1 g12424 g12424.t5 cds g12424.t5.CDS2 23507150 23507320
chr_1 g12424 g12424.t5 exon g12424.t5.exon3 23507387 23507770
chr_1 g12424 g12424.t5 cds g12424.t5.CDS3 23507387 23507512
chr_1 g12424 g12424.t5 TSS g12424.t5 NA NA
chr_1 g12424 g12424.t5 TTS g12424.t5 NA NA

Sequences

>g12424.t5 Gene=g12424 Length=859
ACAAAACCACCAACACCAGTTGAAAGATCAATTACACCACCAGCATTGAAAATAAAAACT
CCCTCACCAGAGCCTGAAAAGACAATCATTCAAGAAAAGCCAGCAAAACTTCTTATCGAT
TTTACCAATGATGAAAAAATTCCAGAAGGCCCACCCAAAGTTATTAAAAGAAAAGCTCCA
GTTCCAATTTCGACTGAACAGTCTCAAGATATTGCAATATCACGACCACAAGCACCAAAA
GTGCCAATCAATCAAGGCATGATTCCACCACCACCTAAAAAAGAAGAAAGCAAGCCACCA
GTTCAAATTCCAATTTTATCAACAACACCAGCAACGCCTTTACCTTTGCAAAAGCATTTT
GTTGAACCAACACCGCCTTCACCTTCTGCTATTGCAATCGATTCTGCTGCCTCATTTAGC
AGCACTGAAAAACTTGTCACATCAACCGATCCTGGTAAAGAAGCAAATTTTGCTGCATCA
TCGCCACCAATGTTGCGACCCGTAAATAAAATTGAGGATGTAAAAACAATAAAAAGGCAA
ATGAAGACTGGTTGGTTAAATTTAACTGATATTCGACACTTGAATGCATACTTGACTGTA
TATCCACAGTGACTTGACCAAATGCAAGCAAGTTGTCTTACACGAAAATTGTGTCTAATT
TTTAAAATTTTATTCAATTTAGTCAAAACTTTGCAAATTTAAGAGAGATTGACTTTCGTA
CAATTTAGCTAAATTTTAACGAAATTTAATAAATTTTGAATGAAAAAAGAGACTTTTTTG
TAAGTCAACTTGCATGAATTAGTCAAGTCACTTTACGCATATGAGTCAAGTATGTATGGA
ACTAAAATGTTCAACTAAC

>g12424.t5 Gene=g12424 Length=117
MIPPPPKKEESKPPVQIPILSTTPATPLPLQKHFVEPTPPSPSAIAIDSAASFSSTEKLV
TSTDPGKEANFAASSPPMLRPVNKIEDVKTIKRQMKTGWLNLTDIRHLNAYLTVYPQ

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed