General information for g12424.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12424 is located on chr_1: 23507502..23515129 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12424 | g12424.t8 | isoform | g12424.t8 | 23500058 | 23507770 |
| chr_1 | g12424 | g12424.t8 | exon | g12424.t8.exon1 | 23500058 | 23500361 |
| chr_1 | g12424 | g12424.t8 | cds | g12424.t8.CDS1 | 23500305 | 23500361 |
| chr_1 | g12424 | g12424.t8 | exon | g12424.t8.exon2 | 23507150 | 23507324 |
| chr_1 | g12424 | g12424.t8 | cds | g12424.t8.CDS2 | 23507150 | 23507324 |
| chr_1 | g12424 | g12424.t8 | exon | g12424.t8.exon3 | 23507394 | 23507636 |
| chr_1 | g12424 | g12424.t8 | cds | g12424.t8.CDS3 | 23507394 | 23507512 |
| chr_1 | g12424 | g12424.t8 | exon | g12424.t8.exon4 | 23507691 | 23507770 |
| chr_1 | g12424 | g12424.t8 | TSS | g12424.t8 | NA | NA |
| chr_1 | g12424 | g12424.t8 | TTS | g12424.t8 | NA | NA |
Sequences
>g12424.t8 Gene=g12424 Length=802
ACAAAACCACCAACACCAGTTGAAAGATCAATTACACCACCAGCATTGAAAATAAAAACT
CCCTCACCAGAGCCTGAAAAAAAAATTCCAGAAGGCCCACCCAAAGTTATTAAAAGAAAA
GCTCCAGTTCCAATTTCGACTGAACAGTCTCAAGATATTGCAATATCACGACCACAAGCA
CCAAAAGTGCCAATCAATCAAGGCATGATTCCACCACCACCTAAAAAAGAAGAAAGCAAG
CCACCAGTTCAAATTCCAATTTTATCAACAACACCAGCAACGCCTTTACCTTTGCAAAAG
CATTTTGTTGAACCAACACCGCCACCTTCTGCTATTGCAATCGATTCTGCTGCCTCATTT
AGCAGCACTGAAAAACTTGTCACATCAACCGATCCTGGTAAAGAAGCAAATTTTGCTGCA
TCATCGCCACCAATGTTGCGACCCGTAAATAAAATTGAGGATGTAAAAACAATAAAAAGG
CAAATGAAGACTGGTTGGTTAAATTTAACTGATATTCGACACTTGAATGCATACTTGACT
GTATATCCACAGTGACTTGACCAAATGCAAGCAAGTTGTCTTACACGAAAATTGTGTCTA
ATTTTTAAAATTTTATTCAATTTAGTCAAAACTTTGCAAATTTAAGAGAGATTGACTTTC
GTACAATTTAGCTAAATTTTAACGAAATTTAATAAATTTTGAATGAAAAAAGAGACTTTT
TTGTAAGTCAACTTGCATGAATTAGTCAAGTCACTTTACGCATATGAGTCAAGTATGTAT
GGAACTAAAATGTTCAACTAAC
>g12424.t8 Gene=g12424 Length=116
MIPPPPKKEESKPPVQIPILSTTPATPLPLQKHFVEPTPPPSAIAIDSAASFSSTEKLVT
STDPGKEANFAASSPPMLRPVNKIEDVKTIKRQMKTGWLNLTDIRHLNAYLTVYPQ
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed