General information for g12428.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g12428 is located on chr_1: 23553264..23555250 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12428 | g12428.t1 | isoform | g12428.t1 | 23553264 | 23555250 |
| chr_1 | g12428 | g12428.t1 | exon | g12428.t1.exon1 | 23553264 | 23553846 |
| chr_1 | g12428 | g12428.t1 | cds | g12428.t1.CDS1 | 23553264 | 23553846 |
| chr_1 | g12428 | g12428.t1 | exon | g12428.t1.exon2 | 23553903 | 23554393 |
| chr_1 | g12428 | g12428.t1 | cds | g12428.t1.CDS2 | 23553903 | 23554393 |
| chr_1 | g12428 | g12428.t1 | exon | g12428.t1.exon3 | 23554729 | 23555250 |
| chr_1 | g12428 | g12428.t1 | cds | g12428.t1.CDS3 | 23554729 | 23555250 |
| chr_1 | g12428 | g12428.t1 | TSS | g12428.t1 | NA | NA |
| chr_1 | g12428 | g12428.t1 | TTS | g12428.t1 | NA | NA |
Sequences
>g12428.t1 Gene=g12428 Length=1596
ATGAATAAACCAACTTTTGACAAAATTACAAAAATTTGGTCTGCTCCAAAAGTGCCTCCA
GTTTTCAATCCAAATCAAAGTCTTGGTCAGCTTATTTTAAGAGTTTTAAAACTTTCACCA
GAAGTTGTTGCTCAAATTTCAGCTGATACAAAAGTTTCAGTCACGCGACAACAAATTCGT
GAAAGAACAGAAAAATTTGCAAAATATTTAAATAGTATTGGACTTAAACAAGGCGACAAT
GTTGGAATTGTTGCTGCAAATACTGAAAATTTGGCTCCAGCTGTTTTTGCTTGTTTTCTA
CTTGGATTTCCAATCAATCCTTTAGCACCAAATGCAATTGAGAATGACATTGTACATTTC
TTTAGTAAAACTAAACCAAAATTGTTAATTTGTGATGAAAGTATTTTGAAAACTGTTCAA
AATGCTGTAAATATGATGAAGTCGAATGCAAAAATTTTTACAGTTATGGAAGATATTAAA
AATTATGATTCAGTTACAAAAATATTGAATAGACAATCAGAGGAAGAATTTGATTATCCT
GAAATTGATCCAAACTCAATTGCTGCAATTATATTTTCTTCCGGAACGACAGGACCTTTA
AAAGCAATTTTGAAGACACACAAGGAATTAATTTATGGCACAGATTTATTAGATTTTAGT
AAGGAAACTTCTGTTATATTTCAAACATCAGCAATATTTTGGATTACTGGTTTTCAATTA
TTGATTTATTCAACAATTCATCGATTTACTCGTGTTATTACTGCACAACCTTATCATCCA
AAACATTTTGCTGATATACTTAAAGATTATAAAATATCAATGGTTATTCCTGCACCATTT
GCTGTTTCAAATATGATACAAAGTGGATTTTTGAAACAACTTGATGATATGAAATTTTGG
GTTCTTGGTGGTGAACAAATTACCAAAAAACTTATTGATGATTTACAACCATTTGCTCCA
AATTCTTTAATTGCTAGCATGTATGGTTGTACCGAAAATATGTTGGTTTCAATAAATATA
CATGGTGTAAATAATGGAAGTTGTGGACAACCTGTTTTAAATGCAAATTTGAAGATTGTT
GATGATAATGGAAACACTTTGGATAATTTTCAACATGGTGAAATTTACATCAAAAAAGTA
TTTCAACTTAATGAATATTTTGAAGAACCAGAAATAACCAAAGAATCATTTGAAAATGGC
TGGTTTAAAACTGGTGATATTGGATATTTTGATGATGAAGGATTTCTTTATTTTGTTGAT
CGAAAGAAAGATATAATTCGCTATGGAATACTACAAACTTTTCCGAGTGAACTTGAAAAA
ATAATTGATGAAATTGAAGGAGTTGTGAGCAGTTGTGTTGTTGGAGTTTATGATCAAAAT
ATTTCAGGTGATAAAATTTTTGCTTTTGTAATTGTTGACAAGTCAAAAAATTTAACTGAA
GCTCAAATTGAAAATATGGTAAATTCAAAAGTTATTGACCAAAAAAAAATTCGTGGTGGT
GTTCATTTTGTTGAAAAATTTCCATTAGGAAAAACAGGAAAAGTTGACAAAAAAGTTATG
AAAGTAAAGGCTAAAGAAATTATGGAAAGAAAGTAA
>g12428.t1 Gene=g12428 Length=531
MNKPTFDKITKIWSAPKVPPVFNPNQSLGQLILRVLKLSPEVVAQISADTKVSVTRQQIR
ERTEKFAKYLNSIGLKQGDNVGIVAANTENLAPAVFACFLLGFPINPLAPNAIENDIVHF
FSKTKPKLLICDESILKTVQNAVNMMKSNAKIFTVMEDIKNYDSVTKILNRQSEEEFDYP
EIDPNSIAAIIFSSGTTGPLKAILKTHKELIYGTDLLDFSKETSVIFQTSAIFWITGFQL
LIYSTIHRFTRVITAQPYHPKHFADILKDYKISMVIPAPFAVSNMIQSGFLKQLDDMKFW
VLGGEQITKKLIDDLQPFAPNSLIASMYGCTENMLVSINIHGVNNGSCGQPVLNANLKIV
DDNGNTLDNFQHGEIYIKKVFQLNEYFEEPEITKESFENGWFKTGDIGYFDDEGFLYFVD
RKKDIIRYGILQTFPSELEKIIDEIEGVVSSCVVGVYDQNISGDKIFAFVIVDKSKNLTE
AQIENMVNSKVIDQKKIRGGVHFVEKFPLGKTGKVDKKVMKVKAKEIMERK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g12428.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 10 | 424 | 2.9E-85 |
| 8 | g12428.t1 | Gene3D | G3DSA:3.30.300.30 | - | 425 | 529 | 7.5E-17 |
| 3 | g12428.t1 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 4 | 521 | 2.7E-122 |
| 4 | g12428.t1 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 4 | 521 | 2.7E-122 |
| 2 | g12428.t1 | Pfam | PF00501 | AMP-binding enzyme | 39 | 428 | 3.8E-74 |
| 1 | g12428.t1 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 437 | 514 | 7.5E-8 |
| 6 | g12428.t1 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 190 | 201 | - |
| 5 | g12428.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 11 | 524 | 5.89E-96 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed