General information for g12433.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative BTB and MATH domain-containing protein 43.
Parent gene
- The parent gene g12433 is located on chr_1: 23603610..23605018 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12433 | g12433.t1 | TTS | g12433.t1 | 23603358 | 23603358 |
| chr_1 | g12433 | g12433.t1 | isoform | g12433.t1 | 23603610 | 23605018 |
| chr_1 | g12433 | g12433.t1 | exon | g12433.t1.exon1 | 23603610 | 23603657 |
| chr_1 | g12433 | g12433.t1 | cds | g12433.t1.CDS1 | 23603610 | 23603657 |
| chr_1 | g12433 | g12433.t1 | exon | g12433.t1.exon2 | 23603716 | 23603830 |
| chr_1 | g12433 | g12433.t1 | cds | g12433.t1.CDS2 | 23603716 | 23603830 |
| chr_1 | g12433 | g12433.t1 | exon | g12433.t1.exon3 | 23603891 | 23604348 |
| chr_1 | g12433 | g12433.t1 | cds | g12433.t1.CDS3 | 23603891 | 23604348 |
| chr_1 | g12433 | g12433.t1 | exon | g12433.t1.exon4 | 23604405 | 23604696 |
| chr_1 | g12433 | g12433.t1 | cds | g12433.t1.CDS4 | 23604405 | 23604696 |
| chr_1 | g12433 | g12433.t1 | exon | g12433.t1.exon5 | 23604756 | 23605018 |
| chr_1 | g12433 | g12433.t1 | cds | g12433.t1.CDS5 | 23604756 | 23605018 |
| chr_1 | g12433 | g12433.t1 | TSS | g12433.t1 | 23605087 | 23605087 |
Sequences
>g12433.t1 Gene=g12433 Length=1176
ATGGATTCATCAAGTGAATGTTCTGATGTTTGTTGTGAATGTGGTTGTATATGTAACTGC
AGTGATTTAAAGAATATCAAAAAGAAGTCAATTATTGAAGAGTTTACAATATATCGTAAG
ATTAAATTAAAAATTGAAAAATTTTCAAAATTGAAAGAAGCGTCTGAAAGAGTAATGGAT
AATGAAAATTATGTTTATTATAATGAAAAGACTTTAGAAAAAAATTTTATAATGCCAACA
TGCATTCATCGACAATTTACAATCATTATAGGAGTTAATTGTAATTTCTGCGAACTGTTT
CTTTACACTAATGGACCTGATAAACGGACTTCATTGCCCGATTTAAAAGATTTAAATACA
TGCATATGTCAATTTGAAAACATTAACTATGAAAGTCCATGTTATGGGTTTCCAGATTGT
ATTGAAGATGCCGAATGTGAAGTCATTTCTGATAACAATAAAACCTTTGTACAATATGAA
GACAGTCCTGATCAAGAATTAATTTGGAATTTAAAGAATATTGAGAAATCTGAAGAAATT
CACTGTACAATTAAATTTGTTTGCAATTTTGATATAAAACGAAATATTATAATACTTTAT
GAAGATTTTTTGGGAAAAGATCTATTTAACGATATTTCATTAATTTGTGCAGACAACATT
ACTGTTCGTGCTAATAGTATTATTCTAAGCAAATATTCATCCGTTTTCAAAGTTATGCTC
GAAGGAAACATGAAAGAAGCTGAAACCAAAGAAATTAAAATTGATGACATCGACTCAATC
ACAATGCAACAATTAATCAACTTTTTATATGCTGGAAAAATTAACAAAAACGAAGACATG
CTTGAATCAGTTCTTTACGCTGCTGAAAAATATGATATTCAAAATCTCAAGAGTATTTGT
CTTTATCAACTTCACAAAAAATTGTCAATCGAAACGGTTTGGAATACATTAAAAATTGCA
GATATGTATAATGCAGAGTTGCTATTCTTTGAATGTATTGGGTTCTTATTTTACTCTTTT
TCTGAAGTTGAAGATGAAGAAGGATACAAAAATCTGAATCAACGTTTGAAGGAAAAAATC
ATCGCTCAGAAGAAATCAGTCGTTAAAGATTTGACTTTGACTTATGAGGAAGAAAATCGA
ATTGATCAAGTTGATTCTTCAGATAGTGACATTTAA
>g12433.t1 Gene=g12433 Length=391
MDSSSECSDVCCECGCICNCSDLKNIKKKSIIEEFTIYRKIKLKIEKFSKLKEASERVMD
NENYVYYNEKTLEKNFIMPTCIHRQFTIIIGVNCNFCELFLYTNGPDKRTSLPDLKDLNT
CICQFENINYESPCYGFPDCIEDAECEVISDNNKTFVQYEDSPDQELIWNLKNIEKSEEI
HCTIKFVCNFDIKRNIIILYEDFLGKDLFNDISLICADNITVRANSIILSKYSSVFKVML
EGNMKEAETKEIKIDDIDSITMQQLINFLYAGKINKNEDMLESVLYAAEKYDIQNLKSIC
LYQLHKKLSIETVWNTLKIADMYNAELLFFECIGFLFYSFSEVEDEEGYKNLNQRLKEKI
IAQKKSVVKDLTLTYEEENRIDQVDSSDSDI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g12433.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 209 | 291 | 0.000 |
| 6 | g12433.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 193 | 337 | 0.000 |
| 2 | g12433.t1 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 153 | 358 | 0.000 |
| 3 | g12433.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 153 | 358 | 0.000 |
| 1 | g12433.t1 | Pfam | PF00651 | BTB/POZ domain | 205 | 307 | 0.000 |
| 7 | g12433.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 210 | 278 | 15.763 |
| 5 | g12433.t1 | SMART | SM00225 | BTB_4 | 210 | 308 | 0.000 |
| 4 | g12433.t1 | SUPERFAMILY | SSF54695 | POZ domain | 200 | 306 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed