General information for g12433.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g12433 is located on chr_1: 23603610..23605018 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12433 | g12433.t2 | TTS | g12433.t2 | 23603358 | 23603358 |
| chr_1 | g12433 | g12433.t2 | isoform | g12433.t2 | 23603610 | 23604323 |
| chr_1 | g12433 | g12433.t2 | exon | g12433.t2.exon1 | 23603610 | 23603657 |
| chr_1 | g12433 | g12433.t2 | cds | g12433.t2.CDS1 | 23603610 | 23603657 |
| chr_1 | g12433 | g12433.t2 | exon | g12433.t2.exon2 | 23603716 | 23603830 |
| chr_1 | g12433 | g12433.t2 | cds | g12433.t2.CDS2 | 23603716 | 23603830 |
| chr_1 | g12433 | g12433.t2 | exon | g12433.t2.exon3 | 23603891 | 23604323 |
| chr_1 | g12433 | g12433.t2 | cds | g12433.t2.CDS3 | 23603891 | 23604189 |
| chr_1 | g12433 | g12433.t2 | TSS | g12433.t2 | 23605087 | 23605087 |
Sequences
>g12433.t2 Gene=g12433 Length=596
GAAATATTATAATACTTTATGAAGATTTTTTGGGAAAAGATCTATTTAACGATATTTCAT
TAATTTGTGCAGACAACATTACTGTTCGTGCTAATAGTATTATTCTAAGCAAATATTCAT
CCGTTTTCAAAGTTATGCTCGAAGGAAACATGAAAGAAGCTGAAACCAAAGAAATTAAAA
TTGATGACATCGACTCAATCACAATGCAACAATTAATCAACTTTTTATATGCTGGAAAAA
TTAACAAAAACGAAGACATGCTTGAATCAGTTCTTTACGCTGCTGAAAAATATGATATTC
AAAATCTCAAGAGTATTTGTCTTTATCAACTTCACAAAAAATTGTCAATCGAAACGGTTT
GGAATACATTAAAAATTGCAGATATGTATAATGCAGAGTTGCTATTCTTTGAATGTATTG
GGTTCTTATTTTACTCTTTTTCTGAAGTTGAAGATGAAGAAGGATACAAAAATCTGAATC
AACGTTTGAAGGAAAAAATCATCGCTCAGAAGAAATCAGTCGTTAAAGATTTGACTTTGA
CTTATGAGGAAGAAAATCGAATTGATCAAGTTGATTCTTCAGATAGTGACATTTAA
>g12433.t2 Gene=g12433 Length=153
MLEGNMKEAETKEIKIDDIDSITMQQLINFLYAGKINKNEDMLESVLYAAEKYDIQNLKS
ICLYQLHKKLSIETVWNTLKIADMYNAELLFFECIGFLFYSFSEVEDEEGYKNLNQRLKE
KIIAQKKSVVKDLTLTYEEENRIDQVDSSDSDI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g12433.t2 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 1 | 53 | 0.0000000 |
| 6 | g12433.t2 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 70 | 0.0000000 |
| 5 | g12433.t2 | Gene3D | G3DSA:1.25.40.420 | - | 71 | 136 | 0.0000003 |
| 2 | g12433.t2 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 1 | 121 | 0.0000000 |
| 3 | g12433.t2 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 1 | 121 | 0.0000000 |
| 1 | g12433.t2 | Pfam | PF00651 | BTB/POZ domain | 1 | 69 | 0.0000000 |
| 7 | g12433.t2 | ProSiteProfiles | PS50097 | BTB domain profile. | 1 | 40 | 8.6690000 |
| 4 | g12433.t2 | SUPERFAMILY | SSF54695 | POZ domain | 1 | 68 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed