General information for g1244.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable beta-hexosaminidase fdl.
Parent gene
- The parent gene g1244 is located on chr_3: 9113973..9116386 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1244 | g1244.t1 | TSS | g1244.t1 | 9113638 | 9113638 |
| chr_3 | g1244 | g1244.t1 | isoform | g1244.t1 | 9113973 | 9116386 |
| chr_3 | g1244 | g1244.t1 | exon | g1244.t1.exon1 | 9113973 | 9114088 |
| chr_3 | g1244 | g1244.t1 | cds | g1244.t1.CDS1 | 9113973 | 9114088 |
| chr_3 | g1244 | g1244.t1 | exon | g1244.t1.exon2 | 9114158 | 9114582 |
| chr_3 | g1244 | g1244.t1 | cds | g1244.t1.CDS2 | 9114158 | 9114582 |
| chr_3 | g1244 | g1244.t1 | exon | g1244.t1.exon3 | 9114641 | 9114797 |
| chr_3 | g1244 | g1244.t1 | cds | g1244.t1.CDS3 | 9114641 | 9114797 |
| chr_3 | g1244 | g1244.t1 | exon | g1244.t1.exon4 | 9114858 | 9115230 |
| chr_3 | g1244 | g1244.t1 | cds | g1244.t1.CDS4 | 9114858 | 9115230 |
| chr_3 | g1244 | g1244.t1 | exon | g1244.t1.exon5 | 9115294 | 9115481 |
| chr_3 | g1244 | g1244.t1 | cds | g1244.t1.CDS5 | 9115294 | 9115481 |
| chr_3 | g1244 | g1244.t1 | exon | g1244.t1.exon6 | 9115534 | 9115655 |
| chr_3 | g1244 | g1244.t1 | cds | g1244.t1.CDS6 | 9115534 | 9115655 |
| chr_3 | g1244 | g1244.t1 | exon | g1244.t1.exon7 | 9115847 | 9116061 |
| chr_3 | g1244 | g1244.t1 | cds | g1244.t1.CDS7 | 9115847 | 9116061 |
| chr_3 | g1244 | g1244.t1 | exon | g1244.t1.exon8 | 9116141 | 9116386 |
| chr_3 | g1244 | g1244.t1 | cds | g1244.t1.CDS8 | 9116141 | 9116386 |
| chr_3 | g1244 | g1244.t1 | TTS | g1244.t1 | 9117375 | 9117375 |
Sequences
>g1244.t1 Gene=g1244 Length=1842
ATGTACATTTCCGAGACACAAGATTTCATATCATCGCCGTACTTGACACATATTAATAAT
GTCGTCAAGAATAGTGAAATGCTACTTGCAAATTATACTGATGAAAGAAACAGATCATCA
GTGACTGAGCCATGGACTTACTCATGCGAAAAGAACAAGTGTATACGAAAATTACATTCA
GATCTTTCTAGCGAAGTGCGTGTGACATTTCTTTCATGTGCTATGACTTGTGGTGATAAT
GTAAATATTTGGCCACTACCAAAGTCAGCACAAATGAAGAAAACAATTCAGAACATTCAT
TTATCAAATATTCAGTATAAAATTGAAACACCATTTCCTAATGTTGCTGATTTAATGCAC
AAAGCTGTTGCTTTATTTGTGAGTGATATTAAACAAGTTATGAAAGCTAATGGTGCTGAT
TTTGGGAGTAAATCAATTAATGAAGAAAATGTGACTGTCAATATTTTGATGAAAATATTA
GAATTCAATGAAACTATCTTAACAATGCAGTCAGACGAATGTTATCACCTGTTTATAAAA
CAGCAAGACACTTCATTAAATATTTCAATAACATCGAAAACATTTTTTGGTGCACGTCAT
GCATTAGAAACACTTCAACAACTCATCTGGTATGATGATGCTATTCATTCACTTAGAATT
CTTAATTCAGTTAATATTAACGACTGTCCAAAATTCAATTATAGAGGTTTAATGCTTGAT
ACATCGCGACATTATTTTTCAGTTGGTTCAATAAAAAGAATCATCACTGGAATGGCTCAT
GTTAAGCTTAATCGTTTTCATTGGCATATTGTTGATTCACAATCATTTCCATTTGTATCT
GAATTTTATCCTGAACTTTCAAAATATGGTGCATATTCATCAAAAGAAGTTTATACTCAT
AGTGACATCAGTGAAATTGTTGAGTTCGCTGAAGTTCGTGGAATTCAAGTTATTACTGAG
ATTGATGCACCAGCTCACGCGGGAAATGGATGGCAATTTGGAAGTGAAAAAGGTTTGGGT
GAATTGAGTTTGTGCATTAATCAACAGCCATGGAATCGCTATTGTGGTGAACCACCATGT
GGTCAATTAAATCCAAAAAATAACAACACATACATGGTTCTTGAAAAACTTTACAGTGAA
ATTGTAAATCTTACAAAAACTACAGACATTTTTCATTTGGGAGGTGATGAAGTTAATTTT
GATTGCTGGAGACAATTTTTTAAAGGAGCAGATTTGAAAAAACTTTGGTGTGATTTTATG
ATTGAAGCTTATGATAGATTAGTCACAGCTAATAATGATGAAAGTATTAAATATGCAACA
ATATGGAACAGTGAATTTGAAAAAGTAAAATGTCTTCCTGCTGAAAATTTTACTATTCAA
GTTTGGCTAGCAAAAAATCCTGAACTAAAACGTTTCATTGATTCGAAGTACAATCTTATA
ATTTCTCATGTTGATGCTTGGTATTTTGATTGTGGATTTGGAACTTGGCGTAGTACTAGT
GGAGAAGGTGTTTGTCCACCATTTAAAGCTTGGTACACTGTTTATAATTATCAGCCTTGG
AACGAACTTTATCTTACTTCAGAACAAATGAAACAAATCCTTGGTGGTGAAGCCTGCATG
TGGACTGAAACGGTCGATGAATATTCAGTTGATATAAAAATTTGGCCACGAGCTAGTGCA
TTAGCTGAGCGATTATGGAGTGATATAAAGAAATTTAGTATACCAGTAGAAACTGTTCAA
AGGTTTTCAATATTTCATACAAGATTTTTAGATTTAGGATTAAAGTCAGATGTGATATGG
CCAGAATATTGTGAACAGAATTTGAATGAGTGTATAATATAA
>g1244.t1 Gene=g1244 Length=613
MYISETQDFISSPYLTHINNVVKNSEMLLANYTDERNRSSVTEPWTYSCEKNKCIRKLHS
DLSSEVRVTFLSCAMTCGDNVNIWPLPKSAQMKKTIQNIHLSNIQYKIETPFPNVADLMH
KAVALFVSDIKQVMKANGADFGSKSINEENVTVNILMKILEFNETILTMQSDECYHLFIK
QQDTSLNISITSKTFFGARHALETLQQLIWYDDAIHSLRILNSVNINDCPKFNYRGLMLD
TSRHYFSVGSIKRIITGMAHVKLNRFHWHIVDSQSFPFVSEFYPELSKYGAYSSKEVYTH
SDISEIVEFAEVRGIQVITEIDAPAHAGNGWQFGSEKGLGELSLCINQQPWNRYCGEPPC
GQLNPKNNNTYMVLEKLYSEIVNLTKTTDIFHLGGDEVNFDCWRQFFKGADLKKLWCDFM
IEAYDRLVTANNDESIKYATIWNSEFEKVKCLPAENFTIQVWLAKNPELKRFIDSKYNLI
ISHVDAWYFDCGFGTWRSTSGEGVCPPFKAWYTVYNYQPWNELYLTSEQMKQILGGEACM
WTETVDEYSVDIKIWPRASALAERLWSDIKKFSIPVETVQRFSIFHTRFLDLGLKSDVIW
PEYCEQNLNECII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g1244.t1 | Gene3D | G3DSA:3.30.379.10 | Chitobiase | 42 | 229 | 0 |
| 16 | g1244.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 230 | 613 | 0 |
| 3 | g1244.t1 | PANTHER | PTHR22600 | BETA-HEXOSAMINIDASE | 39 | 610 | 0 |
| 4 | g1244.t1 | PANTHER | PTHR22600:SF3 | BETA-HEXOSAMINIDASE FDL-RELATED | 39 | 610 | 0 |
| 17 | g1244.t1 | PIRSF | PIRSF001093 | B-hxosamndse_ab_euk_ | 40 | 613 | 0 |
| 8 | g1244.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 188 | 208 | 0 |
| 6 | g1244.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 226 | 243 | 0 |
| 11 | g1244.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 255 | 276 | 0 |
| 9 | g1244.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 309 | 326 | 0 |
| 5 | g1244.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 363 | 381 | 0 |
| 12 | g1244.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 386 | 399 | 0 |
| 7 | g1244.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 533 | 549 | 0 |
| 10 | g1244.t1 | PRINTS | PR00738 | Glycosyl hydrolase family 20 signature | 550 | 567 | 0 |
| 1 | g1244.t1 | Pfam | PF14845 | beta-acetyl hexosaminidase like | 83 | 208 | 0 |
| 2 | g1244.t1 | Pfam | PF00728 | Glycosyl hydrolase family 20, catalytic domain | 232 | 568 | 0 |
| 13 | g1244.t1 | SUPERFAMILY | SSF55545 | beta-N-acetylhexosaminidase-like domain | 83 | 231 | 0 |
| 14 | g1244.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 232 | 568 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004563 | beta-N-acetylhexosaminidase activity | MF |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed