General information for g12467.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative BTB and MATH domain-containing protein 43.
Parent gene
- The parent gene g12467 is located on chr_1: 23915939..23916391 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12467 | g12467.t1 | TTS | g12467.t1 | 23914719 | 23914719 |
| chr_1 | g12467 | g12467.t1 | isoform | g12467.t1 | 23914814 | 23916391 |
| chr_1 | g12467 | g12467.t1 | exon | g12467.t1.exon1 | 23914814 | 23914891 |
| chr_1 | g12467 | g12467.t1 | cds | g12467.t1.CDS1 | 23914814 | 23914891 |
| chr_1 | g12467 | g12467.t1 | exon | g12467.t1.exon2 | 23914945 | 23915059 |
| chr_1 | g12467 | g12467.t1 | cds | g12467.t1.CDS2 | 23914945 | 23915059 |
| chr_1 | g12467 | g12467.t1 | exon | g12467.t1.exon3 | 23915120 | 23915577 |
| chr_1 | g12467 | g12467.t1 | cds | g12467.t1.CDS3 | 23915120 | 23915577 |
| chr_1 | g12467 | g12467.t1 | exon | g12467.t1.exon4 | 23915639 | 23915942 |
| chr_1 | g12467 | g12467.t1 | cds | g12467.t1.CDS4 | 23915639 | 23915942 |
| chr_1 | g12467 | g12467.t1 | exon | g12467.t1.exon5 | 23916000 | 23916391 |
| chr_1 | g12467 | g12467.t1 | cds | g12467.t1.CDS5 | 23916000 | 23916391 |
| chr_1 | g12467 | g12467.t1 | TSS | g12467.t1 | 23916483 | 23916483 |
Sequences
>g12467.t1 Gene=g12467 Length=1347
ATGGGGAATATTCAAAGTGATAATAATGATAGTAGTGATTCAAGTTCTGTTTCAACTGCT
CCAAGTATTCTTACACCTGATTTTAATTCCGATTTAAATCGTTTCATAGACTTTATGCAC
AATCATCATTGCAAACATGATTTAGAGTGTTTTTCAAAATGTAATTCTAATTGTGATTGT
GAAAGTTGTAAAAGCATTAAAAGAGAAACTATTTTTGAAGAGTATACAATGTATCGCAAA
ATTGGATTGAAGATTGAAAATTACTCAAAATTAAGAGAAATTATAGCGTTCAATAATAAT
AACTTTGATGATGATGATGAGGACAATTTCGTGAATGAGTACTTTTTTAAGGAATTTTCT
ATGCCAATGTGCATGCATAAAGGAATTGACATAACTTTGACTCTCGAACATGATGGTTGT
CTTACTATCAGCGCTGAAATATCTCAAGAATCTTCTGATTCGCAAAATTTAAGTAAAGAA
TTGTGCATTTGCGATTTTCAATGCATCCCATACAAAGAAAAACTCAGAAATAGTTTGCCT
GATTGCATTGATAAAATGGAATGTGTAGCAATTTTGGATGAAAATAAAACCCAAACAATT
GAGCATGATGACTATAACTATGAATATGAATCCTGGAAATTAACAGATATCGAGGAGGAA
TTTAATGAATCTGATGATATTTATTTAATGATCAAATTCGATTGCACATTTCTAATAACA
CGAAATATTGTCATACTCTATGAAGATTTTTTGAAAAAAGATATGTTCAATGATATTTCA
ATAATTTGTGCAGACAACATTACTGTTCGTGCTAATAGTATTATTCTAAGCAAATATTCT
CCTGTTTTCAAAGTTATGCTCAAAGGAAGCATGAAAGAAACTCAAACAAAAGAAATTAAA
ATTGATGACATCGACTCAATCACAATGCAAGAATTTATCAACTTTTTATACACTGGAAAA
GTTAAAAAAATTGAAGACATGCTTGAATCGCTTATCTATGTTGCTGAAAAATATGATGCA
AAAGATCTTAAGAGTATTTGTCTTTATCAACTTCACAAAAAATTGTCAAAAGAAACGCTT
TGGAATACATTAAAAATTGCAGATATGTATAATGCAGAGTTGCTATTCTTTGAATGTATT
GGATTCTTATTTTACTCTTTTTCTGAAGTTGAAGATGAAGAAGGATACAAAAATCTGAAT
CAACATTTGAAAGACAAAATCATCGCTCAGAAGGAATCAGTTTTTAAAGAATTGTTTTTC
ATTTATGAGCCACTAAATGAAGATGAAGAAGAGTTACCAGAAACACAAGTTGAACAAAAA
TCATCAGAAAGCAAAGAAGAACAATAA
>g12467.t1 Gene=g12467 Length=448
MGNIQSDNNDSSDSSSVSTAPSILTPDFNSDLNRFIDFMHNHHCKHDLECFSKCNSNCDC
ESCKSIKRETIFEEYTMYRKIGLKIENYSKLREIIAFNNNNFDDDDEDNFVNEYFFKEFS
MPMCMHKGIDITLTLEHDGCLTISAEISQESSDSQNLSKELCICDFQCIPYKEKLRNSLP
DCIDKMECVAILDENKTQTIEHDDYNYEYESWKLTDIEEEFNESDDIYLMIKFDCTFLIT
RNIVILYEDFLKKDMFNDISIICADNITVRANSIILSKYSPVFKVMLKGSMKETQTKEIK
IDDIDSITMQEFINFLYTGKVKKIEDMLESLIYVAEKYDAKDLKSICLYQLHKKLSKETL
WNTLKIADMYNAELLFFECIGFLFYSFSEVEDEEGYKNLNQHLKDKIIAQKESVFKELFF
IYEPLNEDEEELPETQVEQKSSESKEEQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g12467.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 256 | 338 | 8.41497E-19 |
| 5 | g12467.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 241 | 384 | 5.5E-33 |
| 8 | g12467.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - |
| 9 | g12467.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 448 | - |
| 2 | g12467.t1 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 139 | 409 | 5.8E-25 |
| 3 | g12467.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 139 | 409 | 5.8E-25 |
| 1 | g12467.t1 | Pfam | PF00651 | BTB/POZ domain | 249 | 354 | 9.4E-19 |
| 10 | g12467.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 257 | 325 | 15.308 |
| 7 | g12467.t1 | SMART | SM00225 | BTB_4 | 257 | 355 | 2.1E-16 |
| 4 | g12467.t1 | SUPERFAMILY | SSF54695 | POZ domain | 247 | 353 | 8.07E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
