General information for g12471.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glucosamine-6-phosphate isomerase 2.
Parent gene
- The parent gene g12471 is located on chr_1: 23921359..23922323 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12471 | g12471.t9 | isoform | g12471.t9 | 23921254 | 23922106 |
| chr_1 | g12471 | g12471.t9 | exon | g12471.t9.exon1 | 23921254 | 23921305 |
| chr_1 | g12471 | g12471.t9 | exon | g12471.t9.exon2 | 23921361 | 23921488 |
| chr_1 | g12471 | g12471.t9 | cds | g12471.t9.CDS1 | 23921378 | 23921488 |
| chr_1 | g12471 | g12471.t9 | exon | g12471.t9.exon3 | 23921548 | 23921625 |
| chr_1 | g12471 | g12471.t9 | cds | g12471.t9.CDS2 | 23921548 | 23921625 |
| chr_1 | g12471 | g12471.t9 | exon | g12471.t9.exon4 | 23921866 | 23922106 |
| chr_1 | g12471 | g12471.t9 | cds | g12471.t9.CDS3 | 23921866 | 23921904 |
| chr_1 | g12471 | g12471.t9 | TTS | g12471.t9 | 23922318 | 23922318 |
| chr_1 | g12471 | g12471.t9 | TSS | g12471.t9 | NA | NA |
Sequences
>g12471.t9 Gene=g12471 Length=499
GCTAGATTCTTTAATAATGATATTACAAAAGTTCTGACAAGTGCTTTGACAGTTGGAGTG
GGAACAGTTATGGATGCAAAGGAAGTCATGATATTGATCACTGGTGCACATAAGAGCTTT
GCTTTGTATAAGGCTATAGAAGAAGGTGTAAATCATATGTGGACTGTTAGTGCTTTTCAA
CTTCATCCAGCAACACTTTTTATTTGTGATGAAGATGCAACTCTTGAATTAAGAGTCAAG
ACTGTTAAATATTTTAAGGCATTGAGTGCCGTTCACAGCAAGATGATCGAGCAATAAATC
AATATTTGACTTCATTAAGCATGATTTATCATTTATTTACGTACTATTTGCATTTATTTG
TGTACTTCCATGAATTATATTTTTTTTTTATTTTTAATTGATAAGCATAACATAACGGAA
TGAATTATTTCCGCTTAAATAACTTTTTGTAGGCACTCAAAAATTGAAACAATAAACACA
GAATTCTTTCATTTTAAAA
>g12471.t9 Gene=g12471 Length=75
MDAKEVMILITGAHKSFALYKAIEEGVNHMWTVSAFQLHPATLFICDEDATLELRVKTVK
YFKALSAVHSKMIEQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g12471.t9 | Gene3D | G3DSA:3.40.50.1360 | - | 1 | 75 | 0 |
| 1 | g12471.t9 | PANTHER | PTHR11280:SF9 | GLUCOSAMINE-6-PHOSPHATE ISOMERASE 2 | 1 | 74 | 0 |
| 2 | g12471.t9 | PANTHER | PTHR11280 | GLUCOSAMINE-6-PHOSPHATE ISOMERASE | 1 | 74 | 0 |
| 3 | g12471.t9 | SUPERFAMILY | SSF100950 | NagB/RpiA/CoA transferase-like | 1 | 69 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004342 | glucosamine-6-phosphate deaminase activity | MF |
| GO:0006044 | N-acetylglucosamine metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
