General information for g12477.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g12477 is located on chr_1: 23951941..23954291 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g12477 | g12477.t1 | isoform | g12477.t1 | 23951941 | 23954291 |
| chr_1 | g12477 | g12477.t1 | exon | g12477.t1.exon1 | 23951941 | 23952232 |
| chr_1 | g12477 | g12477.t1 | cds | g12477.t1.CDS1 | 23951941 | 23952232 |
| chr_1 | g12477 | g12477.t1 | exon | g12477.t1.exon2 | 23952290 | 23952409 |
| chr_1 | g12477 | g12477.t1 | cds | g12477.t1.CDS2 | 23952290 | 23952409 |
| chr_1 | g12477 | g12477.t1 | exon | g12477.t1.exon3 | 23952846 | 23952968 |
| chr_1 | g12477 | g12477.t1 | cds | g12477.t1.CDS3 | 23952846 | 23952968 |
| chr_1 | g12477 | g12477.t1 | exon | g12477.t1.exon4 | 23953029 | 23953741 |
| chr_1 | g12477 | g12477.t1 | cds | g12477.t1.CDS4 | 23953029 | 23953741 |
| chr_1 | g12477 | g12477.t1 | exon | g12477.t1.exon5 | 23954037 | 23954170 |
| chr_1 | g12477 | g12477.t1 | cds | g12477.t1.CDS5 | 23954037 | 23954170 |
| chr_1 | g12477 | g12477.t1 | exon | g12477.t1.exon6 | 23954231 | 23954291 |
| chr_1 | g12477 | g12477.t1 | cds | g12477.t1.CDS6 | 23954231 | 23954291 |
| chr_1 | g12477 | g12477.t1 | TSS | g12477.t1 | NA | NA |
| chr_1 | g12477 | g12477.t1 | TTS | g12477.t1 | NA | NA |
Sequences
>g12477.t1 Gene=g12477 Length=1443
ATGACAAATATAGACAGAATTTCTCAAGTTTTTAAAGGTCAACATGTGTTTATTACAGGC
GCATCGGGATTTATGGGACAGACATTTCTTGAAAGACTTTTGAGAGTAACAGAAGTTGAG
AAAATTTATCTTTTACTAAGGACAAAGAAAGGAAAACAACCAGAAGAAAGGATTAAAGAT
TTATTAAGTAATGGTCTATTCGACACACTCAAACAACAATCAAACTTTGAAAAAGTTTCT
GAAAAAATAAAAATCATTGAAGGTGACTGTTCAGTTATTAATTTGGGCATAGAAGATAAA
AATTGGTCAATTTTATGTGAGAATGTTACATTAATTTATCATTTTGCTGCTACAACAAGG
TTTGATGAAAAATTAAAGTCTGCAACAAATCTCAACTTACGCGGCACACATGAAATGATC
AAACTTGCTCGTGAGTGCAAAAAACTTTTACTTTTCTGCCATATTTCAACTGCATATTGT
CATTTGAGTGAGAAATTTTTACTCGAAAAACCCTATGCTCCACCTTATGAACCACATGAA
TTTATGGAACACATAAATCAACTAACTGAAAATGAAGCGGAAATTTATAAGAAAAAATGT
TTAAGTCAAACAATTCCAAACACTTATGTGCTTACAAAAGCACTTGCTGAATCTCTTGTT
GTTGAAGCACTTGAGAAATATCAATTGCCAGTGCTGATATTGCGGCCATCAATCGTGACA
CCAACGTTGTCAAATCCAATTCAAGGATGGTGTCCTGATTTTAACGGACTTGGCGGTTTA
TTAATTGCTGTTGGCAAAGGCGTGATGAGAACTATGTATTGTAATGTGAAATATCATGGA
GATTTTCTTCCTGTTGATGTTGCAACTGGTGGAATTATGATAACAACATGGAGTTATTTA
TCATTAAATGATCATAAAAATTTTATTTTTAACTTTACAACATCAAATCAAATTGCGCTT
AATTGGAAAGAGATCATAGACAAAGGTCTTAAAGTTTGTAGAGAAAAATATCCAATGAGA
CAAATGCTATGGTATCCAAACATAACACTAACAGATAAACTATGGCTTCATAAAACTAGA
ACAATTTTTTATCATTGGATTCCTGCAATAATCATTGACTCTTTTCTCTTCTGTATTAGA
ATAAAACCTTTCCTTTGGAGAGTACACAAAAAAATAGCAAAAGGAATGGATGCTGTAGAA
ACTTTTGCAAATAGTCAATGGGATTTTGATAATTCAAATATGTTGAAATTGAGAACAAAA
ATGAATGAAATTGAATTGCAAAATTATAAAGTCACAATTGACAACGTGAATGTCGATGAA
TATGTAGAAAACTCAGTGTTTGGCGGTCATAAATTTTTAATGAAAAATAGCTGCGATGAG
AAAGATTTTGAAAGAGGAAGAAAAATTGTTAAAATTGTGAGTAATTTAAAAATATTTTTA
TAA
>g12477.t1 Gene=g12477 Length=480
MTNIDRISQVFKGQHVFITGASGFMGQTFLERLLRVTEVEKIYLLLRTKKGKQPEERIKD
LLSNGLFDTLKQQSNFEKVSEKIKIIEGDCSVINLGIEDKNWSILCENVTLIYHFAATTR
FDEKLKSATNLNLRGTHEMIKLARECKKLLLFCHISTAYCHLSEKFLLEKPYAPPYEPHE
FMEHINQLTENEAEIYKKKCLSQTIPNTYVLTKALAESLVVEALEKYQLPVLILRPSIVT
PTLSNPIQGWCPDFNGLGGLLIAVGKGVMRTMYCNVKYHGDFLPVDVATGGIMITTWSYL
SLNDHKNFIFNFTTSNQIALNWKEIIDKGLKVCREKYPMRQMLWYPNITLTDKLWLHKTR
TIFYHWIPAIIIDSFLFCIRIKPFLWRVHKKIAKGMDAVETFANSQWDFDNSNMLKLRTK
MNEIELQNYKVTIDNVNVDEYVENSVFGGHKFLMKNSCDEKDFERGRKIVKIVSNLKIFL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g12477.t1 | CDD | cd05236 | FAR-N_SDR_e | 15 | 338 | 6.86041E-98 |
| 11 | g12477.t1 | CDD | cd09071 | FAR_C | 363 | 454 | 6.7532E-27 |
| 6 | g12477.t1 | Gene3D | G3DSA:3.40.50.720 | - | 5 | 348 | 1.2E-65 |
| 3 | g12477.t1 | PANTHER | PTHR11011:SF61 | FATTY ACYL-COA REDUCTASE | 3 | 460 | 1.3E-157 |
| 4 | g12477.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 3 | 460 | 1.3E-157 |
| 1 | g12477.t1 | Pfam | PF07993 | Male sterility protein | 18 | 288 | 1.1E-68 |
| 2 | g12477.t1 | Pfam | PF03015 | Male sterility protein | 364 | 455 | 3.3E-24 |
| 8 | g12477.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 362 | - |
| 9 | g12477.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 363 | 381 | - |
| 7 | g12477.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 382 | 480 | - |
| 5 | g12477.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 7 | 273 | 2.94E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
