Gene loci information

Transcript annotation

  • This transcript has been annotated as Lipid storage droplets surface-binding protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g12496 g12496.t26 isoform g12496.t26 24005025 24007016
chr_1 g12496 g12496.t26 exon g12496.t26.exon1 24005025 24005514
chr_1 g12496 g12496.t26 TTS g12496.t26 24005029 24005029
chr_1 g12496 g12496.t26 cds g12496.t26.CDS1 24005243 24005514
chr_1 g12496 g12496.t26 exon g12496.t26.exon2 24005596 24006021
chr_1 g12496 g12496.t26 cds g12496.t26.CDS2 24005596 24006021
chr_1 g12496 g12496.t26 exon g12496.t26.exon3 24006836 24007016
chr_1 g12496 g12496.t26 cds g12496.t26.CDS3 24006836 24007016
chr_1 g12496 g12496.t26 TSS g12496.t26 24007159 24007159

Sequences

>g12496.t26 Gene=g12496 Length=1097
ATGTCTAATATTGAAAATCACAGTGATAAAGTTGAATATAATGATAATGGTGCAGTTCAA
AAAGTGACAGTGAATGTTTCTTCTTTATTGCCTCATTTGGAATCAATTGATCGCTTACTC
TCCATACCAGTTTGCTCAATTGCATTTAACCAGAGTCAATCAGTTTATGGAAAAGTAAAA
GATTTTAATCCTATGTTCAATTGGGCTTTTCGTACAGCTGAAGACGTTGTAAAAGGAGCA
GTTACAATTTCAGCTCCAATTGTCAATAAATTTGATAAACCAATCAATTTTGTTGATCAA
ACATTGGTAAAAGGGATTGATAAACTCGAAGCATCTGCACCAATCATTAAGGAACAACCT
GGAGAAATTTTGAGTCAAGCTAAAACAAGAGTAATAGGAGTTGTGCAACCAAGAATTGAT
AGAGTTTGTGAATTTAGAAGAGCGAGTACAGAGAAAGCGGCTTCATTGAAGGAATTATCG
TACAATAAAGCAAACGAAGTACTCGCAACACATTATGGTGCATTAGCAGTTTCAGGTTTT
GACTCAACAGCAGCGCTCGCTGAACGTCTCTTGGACACATTCTTTCCAAAGAATGAAGAA
GATGATAAACCAATCTCTGCAACTGAAGACCCAGTCTTGCATTCAGTACAAACTATTGGT
GCACTTTCGAATAAAGTAGCTCGTCGCGTCTATAGAACTGTTTCTCGACAAGTCAAGCAA
CTGAAGAAAGAAGATCTTGCCGAATACCTTGCCTCACTTATTGCTGTCCTTCGACTTACT
CAATACCTTAATATCATCAACAAATCCAATTTATTTCAACAACAACCACAACAGTCGAAC
TCAAACGGAACAGCTATAGTGAAAGTTGATGCTAAATGAATAACATCGAATCTATTACTC
AGGAGACATTTTTTCTTTCTTCTCTATACATAATTTTTATTTAAGCTAAGCTAATCCAGT
GGAGAATAATTGAAATTTTTGTTTTTATATGTATGTCATCTATTGTTTTTTTGGGGAATA
TTTTTGTTACATTTATTGGCAGCAATTGAAATGTTGCTAAAAATTGTTTAATAAATTCTT
TTTGATAAAAATTAAAA

>g12496.t26 Gene=g12496 Length=292
MSNIENHSDKVEYNDNGAVQKVTVNVSSLLPHLESIDRLLSIPVCSIAFNQSQSVYGKVK
DFNPMFNWAFRTAEDVVKGAVTISAPIVNKFDKPINFVDQTLVKGIDKLEASAPIIKEQP
GEILSQAKTRVIGVVQPRIDRVCEFRRASTEKAASLKELSYNKANEVLATHYGALAVSGF
DSTAALAERLLDTFFPKNEEDDKPISATEDPVLHSVQTIGALSNKVARRVYRTVSRQVKQ
LKKEDLAEYLASLIAVLRLTQYLNIINKSNLFQQQPQQSNSNGTAIVKVDAK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g12496.t26 Coils Coil Coil 224 244 -
2 g12496.t26 PANTHER PTHR14024 PERILIPIN 23 271 3.0E-113
3 g12496.t26 PANTHER PTHR14024:SF50 LIPID STORAGE DROPLETS SURFACE-BINDING PROTEIN 2 23 271 3.0E-113
5 g12496.t26 PIRSF PIRSF036881 PAT 13 282 1.4E-47
1 g12496.t26 Pfam PF03036 Perilipin family 35 265 5.3E-25

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed